View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13284_high_4 (Length: 642)
Name: NF13284_high_4
Description: NF13284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13284_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 13 - 398
Target Start/End: Complemental strand, 3435758 - 3435390
Alignment:
| Q |
13 |
aaaatacgaacataatcaaaccattctctagcaaccgtgcagttatctaccctcaacaatcgaccaaaatcaaaagcacataatctnnnnnnnnttccat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
3435758 |
aaaatacgaacataatcaaaccattctctagcaaccgtgcaattatctaccctcaacaatcgaccaaaatcaaaagcacataatctaaaaaatttcccat |
3435659 |
T |
|
| Q |
113 |
tccatgcttgcaaagaaactccataaattcgaatccgtgcacctccttcaaatttttaaaatatatattccaattaaaagatactattccacgcaatagt |
212 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| ||||| ||||||| |||| | | || || ||||||| |||||||| |
|
|
| T |
3435658 |
tccatgcttgcaaagaaactccgtaaattcgaatccgtgaacctctttcaaat--ttaacaca-atctt---------------tattccatgcaatagt |
3435577 |
T |
|
| Q |
213 |
atctcttatactctctttaatccaatttttattatcccaaaaataactaatgttgagatttcatttaaaatatatattacgaaatcgtt-ttgtaaaaag |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3435576 |
atctcttatactctctttaatccaatttttattatcccaaaaataactaatgttgagattccatttaaaatatatattacgaaatcgttgttgtaaaaag |
3435477 |
T |
|
| Q |
312 |
attcgttttggaaatgaagttggctcctttannnnnnnaatgttattaaaaaactaagtaaactttcatttcttagaacacacaaat |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3435476 |
attcgttttggaaatgaagttggctcctttatttttttaatgttattaaaaaactaagtaaactttcatctcttagaacacacaaat |
3435390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 485 - 626
Target Start/End: Complemental strand, 3435304 - 3435156
Alignment:
| Q |
485 |
gttcgttaattttctatccccgtgaccaattacaagcattcaccataccccct-------atgattcctaagcccatgagagagagaagcattagaaaga |
577 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3435304 |
gttcgttaattttctatccccgtgaccaattataagcattcaccataccccctatgaaatatgattcctaagcccatgagagagagaagaattagaaaga |
3435205 |
T |
|
| Q |
578 |
agnnnnnnncactctatatgacgtagaaaaatgattgaatgcaaattgt |
626 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3435204 |
agaaaaaaatactctatatgacgtagaaaaatgattgaatgcaaattgt |
3435156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 17964285 - 17964370
Alignment:
| Q |
13 |
aaaatacgaacataatcaaaccattctctagcaaccgtgcagttatctaccctcaacaatcgaccaaaatcaaaagcacataatct |
98 |
Q |
| |
|
||||||||| | |||||| ||| ||||||| ||||||||| |||| |||| |||| ||||| ||||||||||||||||||||| |
|
|
| T |
17964285 |
aaaatacgagcgtaatcatacctttctctataaaccgtgcaactatccacccgtaacattcgactaaaatcaaaagcacataatct |
17964370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University