View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13284_high_5 (Length: 584)
Name: NF13284_high_5
Description: NF13284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13284_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 38052360 - 38052002
Alignment:
| Q |
1 |
cactaggttgtatgctttttaatataattaaatcccaatttaaagagcaccaaaacatcaacttacagagatttaaacaatttgttatggtttgtatttt |
100 |
Q |
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| T |
38052360 |
cactaggttgtatgctttttaatataattaaatcccaatttaaagagcaccaaaacatcaacttacagagatttaaacaatttgttatggtttgtatttt |
38052261 |
T |
|
| Q |
101 |
agtttcagactctatcaaaaagtttgatggaactatgtttaaaatccggcggttttggagatactttttagagaaaggttttgttgaaccnnnnnnngaa |
200 |
Q |
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| T |
38052260 |
agtttcagactctatcaaaaagtttgatggaactatgtttaaaatccggcagttttggagatactttttagagaaagattttgttgaaccaaaaaaagaa |
38052161 |
T |
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| Q |
201 |
gaaaatttcaagagtttgaagtttagggcaattctggagcaatataatagaagtttagttttagttttgtaatatgaattgattttttcatcgagaagac |
300 |
Q |
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| T |
38052160 |
gaaaatttcaagagtttgaagtttagggcaattctagagcaatataatagaagtttagttttagttttgtaatatgaattgatttcttcatcgagaagac |
38052061 |
T |
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| Q |
301 |
tcttctccatctacaacggacaataagaagatacatacttacatacgtacatacatatt |
359 |
Q |
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| T |
38052060 |
tcttctccatctacaacgaacaataagaagatacatacttacatacgtacatacatatt |
38052002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 366 - 570
Target Start/End: Complemental strand, 38051897 - 38051682
Alignment:
| Q |
366 |
caaggcatagaataaacaacagatagagtgaaaggggcatgataagagaggttgttggtgccaacagtgctgttaagtagagtgtaaagagtttggatga |
465 |
Q |
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| T |
38051897 |
caaggcatagaataaacaacagatagagtgaaaagg-catcataagagaggttg---gtgccaacagtgctgttaagtagagggtaaagagtttggatga |
38051802 |
T |
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| Q |
466 |
gaaggtagctgc-------------cacacattgaatcatattgatgcctatca-cat-atatagcagcgtctcatcttgttgttttcggtattgttaca |
550 |
Q |
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| T |
38051801 |
gaaggtagctgcaacatagaagcagcacacattgaatcatattgatgcctatcagtatcacatagcagcgtctgatcttgttgttttcggtattgttaca |
38051702 |
T |
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| Q |
551 |
acacaatgtcagttctttct |
570 |
Q |
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|||||| ||||||||||||| |
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| T |
38051701 |
acacaaggtcagttctttct |
38051682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 120 - 183
Target Start/End: Original strand, 40254061 - 40254122
Alignment:
| Q |
120 |
aagtttgatggaactatgtttaaaatccggcggttttggagatactttttagagaaaggttttg |
183 |
Q |
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| T |
40254061 |
aagtttgatcgaactatgtttaaaacccagtggttatggagata--ttttagagaaaagttttg |
40254122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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