View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13284_high_6 (Length: 509)

Name: NF13284_high_6
Description: NF13284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13284_high_6
NF13284_high_6
[»] chr5 (4 HSPs)
chr5 (86-181)||(21012013-21012109)
chr5 (86-184)||(29632594-29632693)
chr5 (86-184)||(21654547-21654646)
chr5 (86-133)||(10647749-10647796)
[»] chr3 (15 HSPs)
chr3 (86-181)||(32793231-32793327)
chr3 (86-181)||(50833604-50833700)
chr3 (86-181)||(50842153-50842249)
chr3 (1-68)||(951725-951792)
chr3 (5-68)||(14174275-14174338)
chr3 (86-134)||(50833760-50833808)
chr3 (86-134)||(50833825-50833873)
chr3 (86-134)||(50841980-50842028)
chr3 (86-134)||(50842045-50842093)
chr3 (91-185)||(16980972-16981067)
chr3 (22-60)||(14174358-14174396)
chr3 (89-180)||(48761952-48762044)
chr3 (86-137)||(1273697-1273748)
chr3 (86-133)||(9640246-9640293)
chr3 (87-137)||(48760757-48760807)
[»] chr2 (6 HSPs)
chr2 (86-184)||(13067156-13067255)
chr2 (86-181)||(40915477-40915573)
chr2 (87-184)||(15930903-15931001)
chr2 (192-305)||(13066994-13067106)
chr2 (86-133)||(4814603-4814649)
chr2 (86-159)||(9059877-9059950)
[»] chr1 (4 HSPs)
chr1 (88-184)||(48538558-48538655)
chr1 (86-181)||(24535404-24535500)
chr1 (87-184)||(39179965-39180063)
chr1 (192-305)||(48538705-48538817)
[»] chr4 (5 HSPs)
chr4 (86-181)||(50232993-50233089)
chr4 (86-184)||(42998638-42998737)
chr4 (86-184)||(42999231-42999330)
chr4 (86-132)||(1663573-1663619)
chr4 (94-134)||(43605642-43605682)
[»] chr7 (5 HSPs)
chr7 (86-174)||(18418404-18418493)
chr7 (1-65)||(40723766-40723830)
chr7 (86-180)||(18478630-18478725)
chr7 (86-134)||(23485480-23485527)
chr7 (86-132)||(24764953-24764999)
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-68)||(258720-258787)
[»] scaffold0421 (1 HSPs)
scaffold0421 (86-184)||(4569-4668)
[»] chr8 (1 HSPs)
chr8 (88-168)||(5242685-5242766)
[»] chr6 (2 HSPs)
chr6 (86-184)||(7015465-7015564)
chr6 (89-180)||(5169674-5169766)
[»] scaffold1598 (1 HSPs)
scaffold1598 (89-180)||(892-984)
[»] scaffold0246 (1 HSPs)
scaffold0246 (90-144)||(11383-11438)


Alignment Details
Target: chr5 (Bit Score: 73; Significance: 4e-33; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 86 - 181
Target Start/End: Complemental strand, 21012109 - 21012013
Alignment:
Q  86 atcccttactccttaatgttattaggttagcaatcacttaaccct-aaaatttccctctaaaattggtgcattaattgttgttagtgttaaccctaa 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| || || |||||||||||||||||||||||||||    
T  21012109 atcccttactccttaatgttattaggttagcaatcacttaaccctaaaaatttccctctcaaaatgttgtattaattgttgttagtgttaaccctaa 21012013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 86 - 184
Target Start/End: Complemental strand, 29632693 - 29632594
Alignment:
Q  86 atcccttactccttaatgttattaggttagcaatcacttaaccct-aaaatttccctctaaaattggtgcattaattgttgttagtgttaaccctaaaaa 184  Q
    |||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||  |  |||||||||||||||||||||| ||||||||||    
T  29632693 atcccttactccttaatgttattaggtttgcaaacacttaaccctaaaaatttccctctaaatctaatgcattaattgttgttagtgttgaccctaaaaa 29632594  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 86 - 184
Target Start/End: Original strand, 21654547 - 21654646
Alignment:
Q  86 atcccttactccttaatgttattaggttagcaatcacttaaccctaaaattt-ccctctaaaattggtgcattaattgttgttagtgttaaccctaaaaa 184  Q
    |||||||||||||||||||||||||||  |||| |||| ||||||| | ||| |||||||||  || |||||||||| ||||||||||||||||||||||    
T  21654547 atcccttactccttaatgttattaggtgtgcaaacactaaaccctacatttttccctctaaatctgatgcattaattattgttagtgttaaccctaaaaa 21654646  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 133
Target Start/End: Complemental strand, 10647796 - 10647749
Alignment:
Q  86 atcccttactccttaatgttattaggttagcaatcacttaaccctaaa 133  Q
    |||||||||||||||| ||| ||||||||||||  |||||||||||||    
T  10647796 atcccttactccttaaagttgttaggttagcaacaacttaaccctaaa 10647749  T

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Target: chr3 (Bit Score: 73; Significance: 4e-33; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 86 - 181
Target Start/End: Complemental strand, 32793327 - 32793231
Alignment:
Q  86 atcccttactccttaatgttattaggttagcaatcacttaaccct-aaaatttccctctaaaattggtgcattaattgttgttagtgttaaccctaa 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| || || |||||||||||||||||||||||||||    
T  32793327 atcccttactccttaatgttattaggttagcaatcacttaaccctaaaaatttccctctcaaaatgttgtattaattgttgttagtgttaaccctaa 32793231  T

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Target: chr3; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 86 - 181
Target Start/End: Complemental strand, 50833700 - 50833604
Alignment:
Q  86 atcccttactccttaatgttattaggttagcaatcacttaaccct-aaaatttccctctaaaattggtgcattaattgttgttagtgttaaccctaa 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||| || || |||||||||||||||||||||||||||    
T  50833700 atcccttactccttaatgttattaggttagcaatcacttaaccctaaaaatttctctctcaaaatgttgtattaattgttgttagtgttaaccctaa 50833604  T

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Target: chr3; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 86 - 181
Target Start/End: Original strand, 50842153 - 50842249
Alignment:
Q  86 atcccttactccttaatgttattaggttagcaatcacttaaccct-aaaatttccctctaaaattggtgcattaattgttgttagtgttaaccctaa 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||| || || |||||||||||||||||||||||||||    
T  50842153 atcccttactccttaatgttattaggttagcaatcacttaaccctaaaaatttctctctcaaaatgttgtattaattgttgttagtgttaaccctaa 50842249  T

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Target: chr3; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 951792 - 951725
Alignment:
Q  1 tctcttttgacgtattaactaatcagatgatagtgtgaatgaatctttcttacccacttatggaaaat 68  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  951792 tctcttttgacgttttaaccaatcagatgatagtgtgaatgaatctttcttacgcacttatggaaaat 951725  T

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Target: chr3; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 14174338 - 14174275
Alignment:
Q  5 ttttgacgtattaactaatcagatgatagtgtgaatgaatctttcttacccacttatggaaaat 68  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  14174338 ttttgacgttttaactaatcagatgatagtgtgaatgaatctttcttacgcacttatggaaaat 14174275  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 134
Target Start/End: Original strand, 50833760 - 50833808
Alignment:
Q  86 atcccttactccttaatgttattaggttagcaatcacttaaccctaaaa 134  Q
    ||||||||||| |||||||||||||||| |||| |||||||||||||||    
T  50833760 atcccttactctttaatgttattaggtttgcaaacacttaaccctaaaa 50833808  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 134
Target Start/End: Original strand, 50833825 - 50833873
Alignment:
Q  86 atcccttactccttaatgttattaggttagcaatcacttaaccctaaaa 134  Q
    ||||||||||| |||||||||||||||| |||| |||||||||||||||    
T  50833825 atcccttactcgttaatgttattaggtttgcaaacacttaaccctaaaa 50833873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 134
Target Start/End: Complemental strand, 50842028 - 50841980
Alignment:
Q  86 atcccttactccttaatgttattaggttagcaatcacttaaccctaaaa 134  Q
    ||||||||||| |||||||||||||||| |||| |||||||||||||||    
T  50842028 atcccttactcgttaatgttattaggtttgcaaacacttaaccctaaaa 50841980  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 134
Target Start/End: Complemental strand, 50842093 - 50842045
Alignment:
Q  86 atcccttactccttaatgttattaggttagcaatcacttaaccctaaaa 134  Q
    ||||||||||| |||||||||||||||| |||| |||||||||||||||    
T  50842093 atcccttactctttaatgttattaggtttgcaaacacttaaccctaaaa 50842045  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 91 - 185
Target Start/End: Original strand, 16980972 - 16981067
Alignment:
Q  91 ttactccttaatgttattaggttagcaatcacttaaccctaaaat-ttccctctaaaattggtgcattaattgttgttagtgttaaccctaaaaat 185  Q
    ||||||||||||||||||||||| |||||  |||||||||||||  ||  |||||||  |  |||||||| |  ||||||||||||||||||||||    
T  16980972 ttactccttaatgttattaggtttgcaattgcttaaccctaaaaaattttctctaaatctcatgcattaacttctgttagtgttaaccctaaaaat 16981067  T

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Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 14174396 - 14174358
Alignment:
Q  22 atcagatgatagtgtgaatgaatctttcttacccactta 60  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  14174396 atcagatgatagtgtgaatgaatctttcttacgcactta 14174358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 180
Target Start/End: Original strand, 48761952 - 48762044
Alignment:
Q  89 ccttactccttaatgttattaggttagcaatcacttaaccctaa-aatttccctctaaaattggtgcattaattgttgttagtgttaacccta 180  Q
    |||||||| ||||| |||||||||| |||| |||| |||||||| ||||||||||||||  |  ||||||||  ||||| |||| ||||||||    
T  48761952 ccttactctttaatattattaggtttgcaaccactaaaccctaataatttccctctaaatctattgcattaaacgttgtcagtgataacccta 48762044  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 1273697 - 1273748
Alignment:
Q  86 atcccttactccttaatgttattaggttagcaatcacttaaccctaaaattt 137  Q
    |||||||| || | |||||||||||||| ||||||||| |||||||||||||    
T  1273697 atcccttattcttaaatgttattaggtttgcaatcactaaaccctaaaattt 1273748  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 133
Target Start/End: Original strand, 9640246 - 9640293
Alignment:
Q  86 atcccttactccttaatgttattaggttagcaatcacttaaccctaaa 133  Q
    |||||||||||||||| ||| ||||||||||||  |||||||||||||    
T  9640246 atcccttactccttaaagttgttaggttagcaacaacttaaccctaaa 9640293  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 137
Target Start/End: Original strand, 48760757 - 48760807
Alignment:
Q  87 tcccttactccttaatgttattaggttagcaatcacttaaccctaaaattt 137  Q
    ||||||||||||||  ||| ||||||||||||  |||||||||||||||||    
T  48760757 tcccttactccttagagttgttaggttagcaacaacttaaccctaaaattt 48760807  T

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Target: chr2 (Bit Score: 72; Significance: 2e-32; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 86 - 184
Target Start/End: Complemental strand, 13067255 - 13067156
Alignment:
Q  86 atcccttactccttaatgttattaggttagcaatcacttaaccct-aaaatttccctctaaaattggtgcattaattgttgttagtgttaaccctaaaaa 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||  |||||| |||||||||||||    
T  13067255 atcccttactccttaatgttattaggttagcaatcacttaaccctaaaaatttccctctaaaactggttcattaattgccgttagtattaaccctaaaaa 13067156  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 86 - 181
Target Start/End: Complemental strand, 40915573 - 40915477
Alignment:
Q  86 atcccttactccttaatgttattaggttagcaatcacttaaccct-aaaatttccctctaaaattggtgcattaattgttgttagtgttaaccctaa 181  Q
    |||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||| ||| || || |||||||||||||||||||||||||||    
T  40915573 atcccttactccttaatgttgttaggttagcaatcacttaaccctaaaaaattccctctcaaaatgttgtattaattgttgttagtgttaaccctaa 40915477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 87 - 184
Target Start/End: Complemental strand, 15931001 - 15930903
Alignment:
Q  87 tcccttactccttaatgttattaggttagcaatcacttaaccct-aaaatttccctctaaaattggtgcattaattgttgttagtgttaaccctaaaaa 184  Q
    ||||||| ||||||||||||||||||| |||| || |||||||| |||||||||||||||||    ||||||||||||| |||||| ||||||||||||    
T  15931001 tcccttattccttaatgttattaggtttgcaaacatttaaccctaaaaatttccctctaaaaccaatgcattaattgttcttagtgctaaccctaaaaa 15930903  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 192 - 305
Target Start/End: Complemental strand, 13067106 - 13066994
Alignment:
Q  192 aacgtgccatttttatagaatgctgatacaatgaattgcatttatttgcgccaattgctgttcggtttggaaaacagaaaatctctccactcagcctcct 291  Q
    ||||||||||||| ||| | | ||||||||||||||||||||||||||| || | | || | | || |||||||||| ||||||||||||||||||||      
T  13067106 aacgtgccattttgataaatttctgatacaatgaattgcatttatttgcacctaattctatgccgtatggaaaacag-aaatctctccactcagcctctc 13067008  T
Q  292 ttttcggtttccaa 305  Q
    ||||| ||||||||    
T  13067007 ttttcagtttccaa 13066994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 133
Target Start/End: Original strand, 4814603 - 4814649
Alignment:
Q  86 atcccttactccttaatgttattaggttagcaatcacttaaccctaaa 133  Q
    ||||||||||||||||| |||||||||| |||| ||||||||||||||    
T  4814603 atcccttactccttaattttattaggtt-gcaaacacttaaccctaaa 4814649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 86 - 159
Target Start/End: Complemental strand, 9059950 - 9059877
Alignment:
Q  86 atcccttactccttaatgttattaggttagcaatcacttaaccct-aaaatttccctctaaaattggtgcattaa 159  Q
    ||||||||||||||||| |||||||||| ||||  |||||||||| |||||||  |||||||||||  |||||||    
T  9059950 atcccttactccttaatcttattaggtt-gcaacaacttaaccctaaaaatttgactctaaaattgcagcattaa 9059877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 88 - 184
Target Start/End: Original strand, 48538558 - 48538655
Alignment:
Q  88 cccttactccttaatgttattaggttagcaatcacttaaccct-aaaatttccctctaaaattggtgcattaattgttgttagtgttaaccctaaaaa 184  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || | |||||||||  ||||||||||||||||||||    
T  48538558 cccttactccttaatgttattaggttagcaatcacttaaccctaaaaatttccctctaaaactgtttcattaattgccgttagtgttaaccctaaaaa 48538655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 86 - 181
Target Start/End: Complemental strand, 24535500 - 24535404
Alignment:
Q  86 atcccttactccttaatgttattaggttagcaatcacttaaccc-taaaatttccctctaaaattggtgcattaattgttgttagtgttaaccctaa 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||| || || |||||||||||||||||||||||||||    
T  24535500 atcccttactccttaatgttattaggttagcaatcacttaacccaaaaaatttccctctcaaaatgttgtattaattgttgttagtgttaaccctaa 24535404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 87 - 184
Target Start/End: Original strand, 39179965 - 39180063
Alignment:
Q  87 tcccttactccttaatgttattaggttagcaatcacttaaccctaa-aatttccctctaaaattggtgcattaattgttgttagtgttaaccctaaaaa 184  Q
    ||||||||||||||||||||||||||| |||| |||| |||||||| ||||||||||||||  |  |||||||| ||||||| ||| ||||||||||||    
T  39179965 tcccttactccttaatgttattaggtttgcaaccactaaaccctaataatttccctctaaatcttttgcattaaatgttgttggtgataaccctaaaaa 39180063  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 192 - 305
Target Start/End: Original strand, 48538705 - 48538817
Alignment:
Q  192 aacgtgccatttttatagaatgctgatacaatgaattgcatttatttgcgccaattgctgttcggtttggaaaacagaaaatctctccactcagcctcct 291  Q
    ||||||||||||| ||| | | ||||||||||||||||||||||||||| || | | || | | || |||||||||| ||||||||||||||||||||      
T  48538705 aacgtgccattttgataaatttctgatacaatgaattgcatttatttgcacctaattctatgccgtatggaaaacag-aaatctctccactcagcctctc 48538803  T
Q  292 ttttcggtttccaa 305  Q
    ||||| ||||||||    
T  48538804 ttttcagtttccaa 48538817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 86 - 181
Target Start/End: Complemental strand, 50233089 - 50232993
Alignment:
Q  86 atcccttactccttaatgttattaggttagcaatcacttaaccct-aaaatttccctctaaaattggtgcattaattgttgttagtgttaaccctaa 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| | || ||| || || |||||||||||||||||||||||||||    
T  50233089 atcccttactccttaatgttattaggttagcaatcacttaaccctaaaaatttctcgctcaaaatgttgtattaattgttgttagtgttaaccctaa 50232993  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 86 - 184
Target Start/End: Complemental strand, 42998737 - 42998638
Alignment:
Q  86 atcccttactccttaatgttattaggttagcaatcacttaaccctaaaa-tttccctctaaaattggtgcattaattgttgttagtgttaaccctaaaaa 184  Q
    |||||||||||||||||||||||||||  |||| ||||||||||||||| ||||||||||||  |  |||||||||||||||||||||||||||||||||    
T  42998737 atcccttactccttaatgttattaggtctgcaaacacttaaccctaaaaatttccctctaaatcttatgcattaattgttgttagtgttaaccctaaaaa 42998638  T

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Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 86 - 184
Target Start/End: Complemental strand, 42999330 - 42999231
Alignment:
Q  86 atcccttactccttaatgttattaggttagcaatcacttaaccct-aaaatttccctctaaaattggtgcattaattgttgttagtgttaaccctaaaaa 184  Q
    |||||||||||||||||||||||||||  |||| ||||||||||| ||||||||||||||||  |  ||||||||||| |||||||||||||||||||||    
T  42999330 atcccttactccttaatgttattaggtctgcaaacacttaaccctaaaaatttccctctaaatcttatgcattaattgctgttagtgttaaccctaaaaa 42999231  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 86 - 132
Target Start/End: Complemental strand, 1663619 - 1663573
Alignment:
Q  86 atcccttactccttaatgttattaggttagcaatcacttaaccctaa 132  Q
    |||||||||||||||| ||| ||||||||||||  ||||||||||||    
T  1663619 atcccttactccttaaagttgttaggttagcaacaacttaaccctaa 1663573  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 43605682 - 43605642
Alignment:
Q  94 ctccttaatgttattaggttagcaatcacttaaccctaaaa 134  Q
    |||||||||||||||||||| |||| || ||||||||||||    
T  43605682 ctccttaatgttattaggtttgcaaacaattaaccctaaaa 43605642  T

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Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 86 - 174
Target Start/End: Complemental strand, 18418493 - 18418404
Alignment:
Q  86 atcccttactccttaatgttattaggttagcaatcacttaaccct-aaaatttccctctaaaattggtgcattaattgttgttagtgtta 174  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||| || || ||||||||||||||||||||    
T  18418493 atcccttactccttaatgttgttaggttagcaatcacttaaccctaaaaatttccctctcaaaatgttgtattaattgttgttagtgtta 18418404  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 40723766 - 40723830
Alignment:
Q  1 tctcttttgacgtattaactaatcagatgatagtgtgaatgaatctttcttacccacttatggaa 65  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  40723766 tctcttttgacgttttaactaatcaaatgatagtgtgaatgaatctttcttacgcacttatggaa 40723830  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 86 - 180
Target Start/End: Original strand, 18478630 - 18478725
Alignment:
Q  86 atcccttactccttaatgttattaggttagcaatcacttaaccctaa-aatttccctctaaaattggtgcattaattgttgttagtgttaacccta 180  Q
    |||||||||||||||||||||||||||| ||||  ||| |||||||| ||||||||||||||  |  |||||||| ||||||| ||| ||||||||    
T  18478630 atcccttactccttaatgttattaggtttgcaactactaaaccctaataatttccctctaaatctattgcattaaatgttgttggtgataacccta 18478725  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 134
Target Start/End: Original strand, 23485480 - 23485527
Alignment:
Q  86 atcccttactccttaatgttattaggttagcaatcacttaaccctaaaa 134  Q
    ||||||||||||||||| |||||||||| |||| |||||||||||||||    
T  23485480 atcccttactccttaattttattaggtt-gcaaacacttaaccctaaaa 23485527  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 86 - 132
Target Start/End: Original strand, 24764953 - 24764999
Alignment:
Q  86 atcccttactccttaatgttattaggttagcaatcacttaaccctaa 132  Q
    |||||||||||||||| ||| ||||||||||||  ||||||||||||    
T  24764953 atcccttactccttaaagttgttaggttagcaacaacttaaccctaa 24764999  T

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Target: scaffold0007 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 258720 - 258787
Alignment:
Q  1 tctcttttgacgtattaactaatcagatgatagtgtgaatgaatctttcttacccacttatggaaaat 68  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  258720 tctcttttgacgttttaactaatcaaatgatagtgtgaatgaatctttcttacacacttatggaaaat 258787  T

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Target: scaffold0421 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0421
Description:

Target: scaffold0421; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 86 - 184
Target Start/End: Original strand, 4569 - 4668
Alignment:
Q  86 atcccttactccttaatgttattaggttagcaatcacttaaccct-aaaatttccctctaaaattggtgcattaattgttgttagtgttaaccctaaaaa 184  Q
    |||||||| ||||||||||||||||||| |||| |||||||| || |||||||||||||||||    ||||||||||||| |||||| ||||||||||||    
T  4569 atcccttattccttaatgttattaggtttgcaaacacttaactctaaaaatttccctctaaaaccaatgcattaattgttcttagtgctaaccctaaaaa 4668  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 88 - 168
Target Start/End: Complemental strand, 5242766 - 5242685
Alignment:
Q  88 cccttactccttaatgttattaggttagcaatcacttaaccct-aaaatttccctctaaaattggtgcattaattgttgtta 168  Q
    |||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||  |  |||||||||||||||||    
T  5242766 cccttactccttaatgttattaggtttgcaaacacttaaccctaaaaatttccctctaaatctattgcattaattgttgtta 5242685  T

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Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 86 - 184
Target Start/End: Original strand, 7015465 - 7015564
Alignment:
Q  86 atcccttactccttaatgttattaggttagcaatcacttaaccctaa-aatttccctctaaaattggtgcattaattgttgttagtgttaaccctaaaaa 184  Q
    |||||||||||||||||||||||||||| |||| |||| ||||||||  |||||||||||||  |  || ||||| ||||||||||| ||| ||||||||    
T  7015465 atcccttactccttaatgttattaggtttgcaaccactaaaccctaattatttccctctaaatctattgtattaaatgttgttagtgataatcctaaaaa 7015564  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 180
Target Start/End: Original strand, 5169674 - 5169766
Alignment:
Q  89 ccttactccttaatgttattaggttagcaatcacttaaccctaa-aatttccctctaaaattggtgcattaattgttgttagtgttaacccta 180  Q
    |||||||||||||| |||||||||| |||| |||| |||||||| ||||||||||||||  |  ||||||||  ||||| |||| ||||||||    
T  5169674 ccttactccttaatattattaggtttgcaaccactaaaccctaataatttccctctaaatctattgcattaaacgttgtcagtgataacccta 5169766  T

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Target: scaffold1598 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1598
Description:

Target: scaffold1598; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 180
Target Start/End: Original strand, 892 - 984
Alignment:
Q  89 ccttactccttaatgttattaggttagcaatcacttaaccctaa-aatttccctctaaaattggtgcattaattgttgttagtgttaacccta 180  Q
    |||||||| ||||| |||||||||| |||| |||| |||||||| ||||||||||||||  |  ||||||||  ||||| |||| ||||||||    
T  892 ccttactctttaatattattaggtttgcaaccactaaaccctaataatttccctctaaatctattgcattaaacgttgtcagtgataacccta 984  T

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Target: scaffold0246 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 144
Target Start/End: Original strand, 11383 - 11438
Alignment:
Q  90 cttactccttaatgttattaggttagcaatcacttaaccct-aaaatttccctcta 144  Q
    ||||||||||||||||||||||||  ||| ||||||||| | ||||||||||||||    
T  11383 cttactccttaatgttattaggttttcaaacacttaaccttaaaaatttccctcta 11438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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