View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13284_low_1 (Length: 863)

Name: NF13284_low_1
Description: NF13284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13284_low_1
NF13284_low_1
[»] chr1 (2 HSPs)
chr1 (23-843)||(48491854-48492673)
chr1 (634-843)||(51285873-51286082)
[»] chr7 (13 HSPs)
chr7 (20-312)||(32635950-32636244)
chr7 (616-843)||(32636253-32636480)
chr7 (251-489)||(44370970-44371206)
chr7 (251-489)||(44379824-44380060)
chr7 (251-489)||(23559359-23559595)
chr7 (682-781)||(13326021-13326120)
chr7 (682-781)||(13338357-13338456)
chr7 (160-233)||(23559849-23559926)
chr7 (160-233)||(44370639-44370716)
chr7 (160-233)||(44379493-44379570)
chr7 (20-88)||(23559924-23559990)
chr7 (20-88)||(44370575-44370641)
chr7 (20-88)||(44379429-44379495)
[»] chr5 (7 HSPs)
chr5 (251-517)||(19907548-19907812)
chr5 (251-489)||(27692493-27692729)
chr5 (682-781)||(5667894-5667993)
chr5 (163-233)||(19907315-19907385)
chr5 (152-233)||(27692154-27692239)
chr5 (20-88)||(19907233-19907299)
chr5 (20-83)||(27692110-27692171)
[»] chr6 (3 HSPs)
chr6 (251-489)||(20714357-20714593)
chr6 (160-233)||(20714026-20714103)
chr6 (20-88)||(20713962-20714028)
[»] chr4 (4 HSPs)
chr4 (251-489)||(49227694-49227930)
chr4 (251-324)||(15857343-15857416)
chr4 (160-233)||(49227363-49227440)
chr4 (20-88)||(49227299-49227365)


Alignment Details
Target: chr1 (Bit Score: 710; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 710; E-Value: 0
Query Start/End: Original strand, 23 - 843
Target Start/End: Complemental strand, 48492673 - 48491854
Alignment:
Q  23 gtgagggttaatttgaggaatcagaatcttatgtgactcagtgactaacagctctaattctatctcatgtttttcttgtattatcagatggattttttac 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48492673 gtgagggttaatttgaggaatcagaatcttatgtgactcagtgactaacagctctaattctatctcatgtttttcttgtattatcagatggattttttac 48492574  T
Q  123 taatatgagggttaattgatcaattttttactaacagctctaattcttagcttgattctaattattatggattgtttactagtctttgttttgtgttctt 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  48492573 taatatgagggttaattgatcaattttttactaacagctctaattcttagcttgattctaattattatggattgtttactactctttgttttgtgttctt 48492474  T
Q  223 agacaatgtgcnnnnnnnnaataacttgcttgtgatctttttagtcagatatacagggataattctagaaataggttgtcagtttttggtgatttcgatt 322  Q
    |||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  48492473 agacaatgtgcttttttttaataacttgcttgtgatctttttagtcagatatacagggataattctagaaataggttgttagtttttggtgatttcgatt 48492374  T
Q  323 tgattttgggtcaagctgnnnnnnnnnnntggaggtaatcttgctgacagtagtattacaaaccggttcaaagacactatccaacagtgtggcttaattg 422  Q
    ||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  48492373 tgattttgggtcaagctgaaaaaaaaaa-tggaggtaatcttgctgacagtagtattacaaaccggttcaaagacactatccaacagtgtggcttaactg 48492275  T
Q  423 atttgggctatattggggatattttcatcacataaaagctagattggatggattcttagctagcaatcaatggttgtatatgttccctagtttctgatgc 522  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  48492274 gtttgggctatattggggatattttcatcacataaaagctagattggatggattcttagctagcaatcaatggttgtatatgttccctagtttctaatgc 48492175  T
Q  523 atttcttttgttatttctcttggttttgtgtcatatctcatcagtgtgttgggtttgcagcattttcggtagtattctgttttggnnnnnnnccttttgg 622  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||        |||||||    
T  48492174 atttcttttgttatttctcttggttttgtgtcatatctcatcagtgtgttgggtttgcagcatttttggtagtattctgttttggtttttttgcttttgg 48492075  T
Q  623 actgtgtggtgattattagcagcttccgaatgatagaatcttctggagtttggttgttgtgtagcttagatttgtggtcgatattttggttgtttcaaaa 722  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48492074 actgtgtggtgattattagcagcttccgaatgatagaatcttctggagtttggttgttgtgtagcttagatttgtggtcgatattttggttgtttcaaaa 48491975  T
Q  723 ttgagatggagggcttatcgtgtttgtttttgtctctcctaggagcaattcaagtgcagtaagacagttaaggatttgtttctttatgtgctatcttggt 822  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48491974 ttgagatggagggcttatcgtgtttgtttttgtctctcctaggagcaattcaagtgcagtaagacagttaaggatttgtttctttatgtgctatcttggt 48491875  T
Q  823 gtcctggtagctgctctttat 843  Q
    |||||||||||||||||||||    
T  48491874 gtcctggtagctgctctttat 48491854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 634 - 843
Target Start/End: Original strand, 51285873 - 51286082
Alignment:
Q  634 attattagcagcttccgaatgatagaatcttctggagtttggttgttgtgtagcttagatttgtggtcgatattttggttgtttcaaaattgagatggag 733  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| |||||||||||||| |||||    
T  51285873 attattagcagcttccgaatgatagaatcttctggagtttggttgttctgtagcttagatttgttgtctatattttggtggtttcaaaattgaggtggag 51285972  T
Q  734 ggcttatcgtgtttgtttttgtctctcctaggagcaattcaagtgcagtaagacagttaaggatttgtttctttatgtgctatcttggtgtcctggtagc 833  Q
    |||||||| ||||||||||||||||  |||| |||||||||||||||| ||||||||| |||||||||||| || |||||||||||||| ||||||||||    
T  51285973 ggcttatcttgtttgtttttgtctcggctagaagcaattcaagtgcagcaagacagttgaggatttgtttccttttgtgctatcttggtatcctggtagc 51286072  T
Q  834 tgctctttat 843  Q
    ||||||||||    
T  51286073 tgctctttat 51286082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 20 - 312
Target Start/End: Original strand, 32635950 - 32636244
Alignment:
Q  20 aatgtgagggttaatttgaggaatcagaatcttatgtgactcagtgactaacagctctaattctatctcatgtttttcttgtattatcagatggattttt 119  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  32635950 aatgtgagggttaatatgaggaatcagaatcttatgtgactcagtgactaacagctctaattctattcaatgtttttcttgtattatcagatggattttt 32636049  T
Q  120 ta--ctaatatgagggttaattgatcaattttttactaacagctctaattcttagcttgattctaattattatggattgtttactagtctttgttttgtg 217  Q
    |   ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||    
T  32636050 tttgctaatatgagggttaattgatcaattttttactaacagctctaattcttggcttgattctaattattatggattgtttactactatttgttttgtg 32636149  T
Q  218 ttcttagacaatgtgcnnnnnnnnaataacttgcttgtgatctttttagtcagatatacagggataattctagaaataggttgtcagtttttggt 312  Q
    ||||||||||||||||        ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||    
T  32636150 ttcttagacaatgtgcttttttttaataacttgcttgtgatctttttagtcagctatacagtgataattctagaaataggttgttagtttttggt 32636244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 616 - 843
Target Start/End: Original strand, 32636253 - 32636480
Alignment:
Q  616 cttttggactgtgtggtgattattagcagcttccgaatgatagaatcttctggagtttggttgttgtgtagcttagatttgtggtcgatattttggttgt 715  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||    
T  32636253 cttttggattgtgtggtgattattagcagcttccgaatgatagaatcttccggactttggttgttgtgtagcttagatttgtggtcgatattttggtggt 32636352  T
Q  716 ttcaaaattgagatggagggcttatcgtgtttgtttttgtctctcctaggagcaattcaagtgcagtaagacagttaaggatttgtttctttatgtgcta 815  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||    
T  32636353 ttcaaaattgagatggagggcttatcgtgtttgtttttgtctctgctaggagcaattcaagtgcagcaagacagttaaagatttgtttcttaatgtgcta 32636452  T
Q  816 tcttggtgtcctggtagctgctctttat 843  Q
    ||||||||||||||||||||||||||||    
T  32636453 tcttggtgtcctggtagctgctctttat 32636480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 251 - 489
Target Start/End: Original strand, 44370970 - 44371206
Alignment:
Q  251 cttgtgatctttttagtcagatatacagggataattctagaaataggttgtcagtttttggtgatttcgatttgattttgggtcaagctgnnnnnnnnnn 350  Q
    ||||| |||||||||||||| | ||||| ||||||||||||||||||| || |||||||| ||||||| ||||| ||||| |||||||||              
T  44370970 cttgtaatctttttagtcagctgtacagcgataattctagaaataggtggttagtttttgttgatttcaatttggttttgtgtcaagctggaaaaaaaa- 44371068  T
Q  351 ntggaggtaatcttgctgacagtagtattacaaaccggttcaaagacactatccaacagtgtggcttaattgatttgggctatattggggatattttcat 450  Q
     ||||||||||| |  ||| ||||||||||| |||| |||||||||||||||||| ||| ||||||| | ||||||| |||| |||||||||||||||||    
T  44371069 -tggaggtaatcctattgatagtagtattactaaccagttcaaagacactatccagcagcgtggctttaatgatttgagctacattggggatattttcat 44371167  T
Q  451 cacataaaagctagattggatggattcttagctagcaat 489  Q
    ||||||||||||||||||||  ||||||||| |||||||    
T  44371168 cacataaaagctagattggacagattcttagttagcaat 44371206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 251 - 489
Target Start/End: Original strand, 44379824 - 44380060
Alignment:
Q  251 cttgtgatctttttagtcagatatacagggataattctagaaataggttgtcagtttttggtgatttcgatttgattttgggtcaagctgnnnnnnnnnn 350  Q
    ||||| |||||||||||||| | ||||| ||||||||||||||||||| || |||||||| ||||||| ||||| ||||| |||||||||              
T  44379824 cttgtaatctttttagtcagctgtacagcgataattctagaaataggtggttagtttttgttgatttcaatttggttttgtgtcaagctggaaaaaaaa- 44379922  T
Q  351 ntggaggtaatcttgctgacagtagtattacaaaccggttcaaagacactatccaacagtgtggcttaattgatttgggctatattggggatattttcat 450  Q
     ||||||||||| |  ||| ||||||||||| |||| |||||||||||||||||| ||| ||||||| | ||||||| |||| |||||||||||||||||    
T  44379923 -tggaggtaatcctattgatagtagtattactaaccagttcaaagacactatccagcagcgtggctttaatgatttgagctacattggggatattttcat 44380021  T
Q  451 cacataaaagctagattggatggattcttagctagcaat 489  Q
    ||||||||||||||||||||  ||||||||| |||||||    
T  44380022 cacataaaagctagattggacagattcttagttagcaat 44380060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 251 - 489
Target Start/End: Complemental strand, 23559595 - 23559359
Alignment:
Q  251 cttgtgatctttttagtcagatatacagggataattctagaaataggttgtcagtttttggtgatttcgatttgattttgggtcaagctgnnnnnnnnnn 350  Q
    ||||| |||||||||||||| | ||||| ||||||||||||||||||| || |||||||| ||||||| ||||| ||||| |||||||||              
T  23559595 cttgtaatctttttagtcagctgtacagcgataattctagaaataggtggttagtttttgttgatttcaatttggttttgtgtcaagctggaaaaaaaa- 23559497  T
Q  351 ntggaggtaatcttgctgacagtagtattacaaaccggttcaaagacactatccaacagtgtggcttaattgatttgggctatattggggatattttcat 450  Q
     ||||||||||| |  ||| ||||||||||| |||| |||||||||||||||||| | | ||||||| | ||||||| |||| |||||||||||||||||    
T  23559496 -tggaggtaatcctattgatagtagtattactaaccagttcaaagacactatccagcggcgtggctttaatgatttgagctacattggggatattttcat 23559398  T
Q  451 cacataaaagctagattggatggattcttagctagcaat 489  Q
    ||||||||||||||||||||  ||||||||| |||||||    
T  23559397 cacataaaagctagattggacagattcttagttagcaat 23559359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 682 - 781
Target Start/End: Complemental strand, 13326120 - 13326021
Alignment:
Q  682 tgtagcttagatttgtggtcgatattttggttgtttcaaaattgagatggagggcttatcgtgtttgtttttgtctctcctaggagcaattcaagtgcag 781  Q
    ||||||| ||||||||||||||||||||||| ||||| |||||||| |||||||||| || |||||||||| || || |||||||| |||||||||||||    
T  13326120 tgtagctcagatttgtggtcgatattttggtggtttctaaattgaggtggagggcttgtcttgtttgttttcgtttcgcctaggagtaattcaagtgcag 13326021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 682 - 781
Target Start/End: Complemental strand, 13338456 - 13338357
Alignment:
Q  682 tgtagcttagatttgtggtcgatattttggttgtttcaaaattgagatggagggcttatcgtgtttgtttttgtctctcctaggagcaattcaagtgcag 781  Q
    ||||||| ||||||||||||||||||||||| ||||| |||||||| |||||||||| || |||||||||| || || |||||||| |||||||||||||    
T  13338456 tgtagctcagatttgtggtcgatattttggtggtttctaaattgaggtggagggcttgtcttgtttgttttcgtttcgcctaggagtaattcaagtgcag 13338357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 160 - 233
Target Start/End: Complemental strand, 23559926 - 23559849
Alignment:
Q  160 ctctaattcttagcttgattctaattattatggattg----tttactagtctttgttttgtgttcttagacaatgtgc 233  Q
    |||||||||||||||||||||||||||||||| ||||    |||| |  |||||||||||||||||||||||||||||    
T  23559926 ctctaattcttagcttgattctaattattatgcattgtttatttatttctctttgttttgtgttcttagacaatgtgc 23559849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 44370639 - 44370716
Alignment:
Q  160 ctctaattcttagcttgattctaattattatggattg----tttactagtctttgttttgtgttcttagacaatgtgc 233  Q
    |||||||||||||||||||||||||||||||| ||||    |||| |  |||||||||||||||||||||||||||||    
T  44370639 ctctaattcttagcttgattctaattattatgcattgtttatttatttctctttgttttgtgttcttagacaatgtgc 44370716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 44379493 - 44379570
Alignment:
Q  160 ctctaattcttagcttgattctaattattatggattg----tttactagtctttgttttgtgttcttagacaatgtgc 233  Q
    |||||||||||||||||||||||||||||||| ||||    |||| |  |||||||||||||||||||||||||||||    
T  44379493 ctctaattcttagcttgattctaattattatgcattgtttatttatttctctttgttttgtgttcttagacaatgtgc 44379570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 23559990 - 23559924
Alignment:
Q  20 aatgtgagggttaatttgaggaatcagaatcttatgtgactcagtgactaacagctctaattctatctc 88  Q
    |||||||||||||||  |||||||| |||||||  ||||||| |||||||||| |||||||||||||||    
T  23559990 aatgtgagggttaatacgaggaatctgaatctt--gtgactcggtgactaacatctctaattctatctc 23559924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 44370575 - 44370641
Alignment:
Q  20 aatgtgagggttaatttgaggaatcagaatcttatgtgactcagtgactaacagctctaattctatctc 88  Q
    |||||||||||||||  |||||||| |||||||  ||||||| |||||||||| |||||||||||||||    
T  44370575 aatgtgagggttaatacgaggaatctgaatctt--gtgactcggtgactaacatctctaattctatctc 44370641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 44379429 - 44379495
Alignment:
Q  20 aatgtgagggttaatttgaggaatcagaatcttatgtgactcagtgactaacagctctaattctatctc 88  Q
    |||||||||||||||  |||||||| ||||||  |||||||| |||||||||| ||||||||| |||||    
T  44379429 aatgtgagggttaatacgaggaatctgaatct--tgtgactcggtgactaacatctctaattccatctc 44379495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 4e-59; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 251 - 517
Target Start/End: Original strand, 19907548 - 19907812
Alignment:
Q  251 cttgtgatctttttagtcagatatacagggataattctagaaataggttgtcagtttttggtgatttcgatttgattttgggtcaagctgnnnnnnnnnn 350  Q
    ||||| |||||||||||||| | ||||| ||||||||||||||||||| || |||||||||||||||| ||||| ||||| |||||||||              
T  19907548 cttgtaatctttttagtcagctgtacagcgataattctagaaataggtggttagtttttggtgatttcaatttggttttgtgtcaagctgggaaaaaaa- 19907646  T
Q  351 ntggaggtaatcttgctgacagtagtattacaaaccggttcaaagacactatccaacagtgtggcttaattgatttgggctatattggggatattttcat 450  Q
     ||||||||||| |  ||| ||||||||||| |||| |||||||||||||||||| ||| ||||||| | |||||||||||| |||||||||||||||||    
T  19907647 -tggaggtaatcctattgatagtagtattactaaccagttcaaagacactatccagcagcgtggctttaatgatttgggctacattggggatattttcat 19907745  T
Q  451 cacataaaagctagattggatggattcttagctagcaatcaatggttgtatatgttccctagtttct 517  Q
    ||||||||||||||||||||  ||||||||| |   ||||||||||||| ||||||||||| |||||    
T  19907746 cacataaaagctagattggacagattcttagtttttaatcaatggttgtttatgttccctaatttct 19907812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 251 - 489
Target Start/End: Original strand, 27692493 - 27692729
Alignment:
Q  251 cttgtgatctttttagtcagatatacagggataattctagaaataggttgtcagtttttggtgatttcgatttgattttgggtcaagctgnnnnnnnnnn 350  Q
    ||||| |||||||||||||| | ||||| ||||||||||||||||||| || |||||||| ||||||| ||||| ||||| |||||||||              
T  27692493 cttgtaatctttttagtcagctgtacagcgataattctagaaataggtggttagtttttgttgatttcaatttggttttgtgtcaagctggaaaaaaaa- 27692591  T
Q  351 ntggaggtaatcttgctgacagtagtattacaaaccggttcaaagacactatccaacagtgtggcttaattgatttgggctatattggggatattttcat 450  Q
     ||||||||||| |  ||| ||||||||||| |||| |||||||||||||||||| ||| ||||||| | ||||||| |||| |||||||||||||||||    
T  27692592 -tggaggtaatcctattgatagtagtattactaaccagttcaaagacactatccagcagcgtggctttaatgatttgagctacattggggatattttcat 27692690  T
Q  451 cacataaaagctagattggatggattcttagctagcaat 489  Q
    ||||||||||||||||||||  ||||||||| |||||||    
T  27692691 cacataaaagctagattggacagattcttagttagcaat 27692729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 682 - 781
Target Start/End: Complemental strand, 5667993 - 5667894
Alignment:
Q  682 tgtagcttagatttgtggtcgatattttggttgtttcaaaattgagatggagggcttatcgtgtttgtttttgtctctcctaggagcaattcaagtgcag 781  Q
    ||||||| ||||||||||||||||||||||| ||||| |||||||| |||||||||| || |||||||||| || || |||||||| |||||||||||||    
T  5667993 tgtagctcagatttgtggtcgatattttggtggtttctaaattgaggtggagggcttgtcttgtttgttttcgtttcgcctaggagtaattcaagtgcag 5667894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 163 - 233
Target Start/End: Original strand, 19907315 - 19907385
Alignment:
Q  163 taattcttagcttgattctaattattatggattgtttactagtctttgttttgtgttcttagacaatgtgc 233  Q
    ||||||||||||||||||||||||||||| |||||||| |  |||||||||||||||||||||||||||||    
T  19907315 taattcttagcttgattctaattattatgcattgtttatttctctttgttttgtgttcttagacaatgtgc 19907385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 152 - 233
Target Start/End: Original strand, 27692154 - 27692239
Alignment:
Q  152 actaacagctctaattcttagcttgattctaattattatggattg----tttactagtctttgttttgtgttcttagacaatgtgc 233  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||    |||| |  |||||||||||||||||||||||||||||    
T  27692154 actaacatctctaattcttagcttgattctaattattatgcattgtttatttatttctctttgttttgtgttcttagacaatgtgc 27692239  T

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Target: chr5; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 19907233 - 19907299
Alignment:
Q  20 aatgtgagggttaatttgaggaatcagaatcttatgtgactcagtgactaacagctctaattctatctc 88  Q
    |||||||||||||||  ||||||||||||||||  |||||||||||||||||| |||||||||||||||    
T  19907233 aatgtgagggttaatacgaggaatcagaatctt--gtgactcagtgactaacatctctaattctatctc 19907299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 27692110 - 27692171
Alignment:
Q  20 aatgtgagggttaatttgaggaatcagaatcttatgtgactcagtgactaacagctctaattct 83  Q
    |||||||||||||||  |||||||| ||||||  |||||||| |||||||||| ||||||||||    
T  27692110 aatgtgagggttaatacgaggaatctgaatct--tgtgactcggtgactaacatctctaattct 27692171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 1e-49; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 251 - 489
Target Start/End: Original strand, 20714357 - 20714593
Alignment:
Q  251 cttgtgatctttttagtcagatatacagggataattctagaaataggttgtcagtttttggtgatttcgatttgattttgggtcaagctgnnnnnnnnnn 350  Q
    ||||| |||||||||||||| | ||||| ||||||||||||||||||| || |||||||| ||||||| ||||| ||||| |||||||||              
T  20714357 cttgtaatctttttagtcagctgtacagcgataattctagaaataggtggttagtttttgttgatttcaatttggttttgtgtcaagctggaaaaaaaa- 20714455  T
Q  351 ntggaggtaatcttgctgacagtagtattacaaaccggttcaaagacactatccaacagtgtggcttaattgatttgggctatattggggatattttcat 450  Q
     ||||||||||| |  ||| ||||||||||| |||| |||||||||||||||||| ||| ||||||| | ||||||| |||| |||||||||||||||||    
T  20714456 -tggaggtaatcctattgatagtagtattactaaccagttcaaagacactatccagcagcgtggctttaatgatttgagctacattggggatattttcat 20714554  T
Q  451 cacataaaagctagattggatggattcttagctagcaat 489  Q
    ||||||||||||||||||||  ||||||||| |||||||    
T  20714555 cacataaaagctagattggacagattcttagttagcaat 20714593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 20714026 - 20714103
Alignment:
Q  160 ctctaattcttagcttgattctaattattatggattg----tttactagtctttgttttgtgttcttagacaatgtgc 233  Q
    |||||||||||||||||||||||||||||||| ||||    |||| |  |||||||||||||||||||||||||||||    
T  20714026 ctctaattcttagcttgattctaattattatgcattgtttatttatttctctttgttttgtgttcttagacaatgtgc 20714103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 20713962 - 20714028
Alignment:
Q  20 aatgtgagggttaatttgaggaatcagaatcttatgtgactcagtgactaacagctctaattctatctc 88  Q
    |||||||||||||||  |||||||| |||||||  ||||||| |||||||||| |||||||||||||||    
T  20713962 aatgtgagggttaatacgaggaatctgaatctt--gtgactcggtgactaacatctctaattctatctc 20714028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 1e-49; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 251 - 489
Target Start/End: Original strand, 49227694 - 49227930
Alignment:
Q  251 cttgtgatctttttagtcagatatacagggataattctagaaataggttgtcagtttttggtgatttcgatttgattttgggtcaagctgnnnnnnnnnn 350  Q
    ||||| |||||||||||||| | ||||| ||||||||||||||||||| || |||||||| ||||||| ||||| ||||| |||||||||              
T  49227694 cttgtaatctttttagtcagctgtacagcgataattctagaaataggtggttagtttttgttgatttcaatttggttttgtgtcaagctggaaaaaaaa- 49227792  T
Q  351 ntggaggtaatcttgctgacagtagtattacaaaccggttcaaagacactatccaacagtgtggcttaattgatttgggctatattggggatattttcat 450  Q
     ||||||||||| |  ||| ||||||||||| |||| |||||||||||||||||| ||| ||||||| | ||||||| |||| |||||||||||||||||    
T  49227793 -tggaggtaatcctattgatagtagtattactaaccagttcaaagacactatccagcagcgtggctttaatgatttgagctacattggggatattttcat 49227891  T
Q  451 cacataaaagctagattggatggattcttagctagcaat 489  Q
    ||||||||||||||||||||  ||||||||| |||||||    
T  49227892 cacataaaagctagattggacagattcttagttagcaat 49227930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 251 - 324
Target Start/End: Complemental strand, 15857416 - 15857343
Alignment:
Q  251 cttgtgatctttttagtcagatatacagggataattctagaaataggttgtcagtttttggtgatttcgatttg 324  Q
    ||||| |||||||||||||| | ||||| ||||||||||||||||||| || |||||||||||||||| |||||    
T  15857416 cttgtaatctttttagtcagctgtacagcgataattctagaaataggtggttagtttttggtgatttcaatttg 15857343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 49227363 - 49227440
Alignment:
Q  160 ctctaattcttagcttgattctaattattatggattg----tttactagtctttgttttgtgttcttagacaatgtgc 233  Q
    |||||||||||||||||||||||||||||||| ||||    |||| |  |||||||||||||||||||||||||||||    
T  49227363 ctctaattcttagcttgattctaattattatgcattgtttatttatttctctttgttttgtgttcttagacaatgtgc 49227440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 49227299 - 49227365
Alignment:
Q  20 aatgtgagggttaatttgaggaatcagaatcttatgtgactcagtgactaacagctctaattctatctc 88  Q
    |||||||||||||||  |||||||| ||||||  |||||||| |||||||||| ||||||||| |||||    
T  49227299 aatgtgagggttaatacgaggaatctgaatct--tgtgactcggtgactaacatctctaattccatctc 49227365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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