View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13284_low_13 (Length: 238)
Name: NF13284_low_13
Description: NF13284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13284_low_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 17 - 211
Target Start/End: Complemental strand, 2223836 - 2223653
Alignment:
| Q |
17 |
agttgcgagtactcctaaaacacgattcccattccaatcaatcactcttccacctgctgcttcaatcctttctctttcatccggaagatctggctgatcg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2223836 |
agttgcgagtactcctaaaacacgattcccattccaatcaatcactcttccacctgctgcttcaatcctttctctttcatccggaagatctggctgatcg |
2223737 |
T |
|
| Q |
117 |
atcatcattaaataataataattcagccaaaacaaagtgtttgatatggtaccaaaagcagttcaaataccataaatgtattttgcttcttaatt |
211 |
Q |
| |
|
||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2223736 |
atcatcattaaataataataatt-----------aattgttggatatggtaccaaaagcagttcaaataccataaatgtattttgcttcttaatt |
2223653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University