View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13285_high_1 (Length: 941)
Name: NF13285_high_1
Description: NF13285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13285_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 849; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 849; E-Value: 0
Query Start/End: Original strand, 19 - 929
Target Start/End: Complemental strand, 8073543 - 8072631
Alignment:
| Q |
19 |
atataggactgctttgcataatgttcatagacctataatatatacatagaaatcaattgatcttatcctaaaagagacaaaaattttgatttgcataatt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
8073543 |
atataggactgctttgcataatgttcatagacctataatatatacatagaaatcaattgatcttatcctaaaagagacaaaaattctgatttgcataatt |
8073444 |
T |
|
| Q |
119 |
catatattgagcatatccttttcttcatgttttgtaaatttactagttcacatgttgttgttggaacatttatgtaaaaaggcatttgggaagtctcttg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
8073443 |
catatattgagcatatccttttcttcatgttttgtaaatttactagttcacatgttgttgttggaacatatatgtaaaaaggcatttgggaagtctcttg |
8073344 |
T |
|
| Q |
219 |
aatggcagaatgtgaaagtcaatctcctgctaatctcttgacatcatgctttgttgagcatccacaattctaatttaccagaaacaaaactgcattaaga |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
8073343 |
aatggcagaatgtgaaagtcaatctcctgctaatctcttgacatcatgctttgttgagcatcctcaattctaatttaccagaaacaaaactgcattaaga |
8073244 |
T |
|
| Q |
319 |
aagtaaattgcattattactattatatatatat--tgcattggtagtaagtagtaaagttaaagtaggtatagatattgcattggttgtgtacatacaca |
416 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8073243 |
aagtaaattgcattattactattatatatatatattgcattggtagtaagtagtaaagttaaagtaggtatagatattgcattggttgtgtacatacaca |
8073144 |
T |
|
| Q |
417 |
ctttcttctattctgttttttctgctcaacataagccgaaatctcctcttgcttaaccagtgaatcctctaaagcctgacaaagcaaacaataacgactg |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8073143 |
ctttcttctattctgttttttctgctcaacataagccgaaatctcctcttgcttaaccagtgaatcctctaaagcctgacaaagcaaacaataacgactg |
8073044 |
T |
|
| Q |
517 |
ttaaacttccatggaacgataaataagcattttagctttcatggaactagcaaaacttaaagatcgatgattgtgttgagtatgactcgtattctctgat |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8073043 |
ttaaacttccatggaacgataaataagcattttagctttcatggaactagcaaaacttaaagatcgatgattgtgttgagtatgactcgtattcgctgat |
8072944 |
T |
|
| Q |
617 |
aagtagtcagtcgatggagcatagtatttaaacacgtcattgtactttgcaatcgtaagaattgcataatnnnnnnnctacatcaaccacttttctgtcg |
716 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||| |
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| T |
8072943 |
aagtagtcagtcgatggagcatagtatttaaacacgacattgtactttgcaatcgtaagaattgcataatagaaaaactacatcagccactttgctgtcg |
8072844 |
T |
|
| Q |
717 |
gaaacgtaggcacaattagtcgaactatgtgatcaatcatttgtgttctggtgtgcattttatttatttgttttctttagaaccaaatatgctgatctaa |
816 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8072843 |
gaaacgtaggcacaattagtcgaactatgtgatcaatcatttgtgttcttgtgtgcattttatttatttgttttctttagaaccaaatatgctgatctaa |
8072744 |
T |
|
| Q |
817 |
catattgaataccttcttggtcgccaagagttctttttccaataaatcagctcgattaatagtattatgtagcatttcctccttctcaggtggcattaca |
916 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8072743 |
catattgaataccttcttggtcgccaagagttctttttccaataaatcagctcgattaatagtattatgtagcatttcctccttctcaggtggcattaca |
8072644 |
T |
|
| Q |
917 |
acaggctgatgat |
929 |
Q |
| |
|
||||||||||||| |
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|
| T |
8072643 |
acaggctgatgat |
8072631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 694 - 797
Target Start/End: Original strand, 4008795 - 4008896
Alignment:
| Q |
694 |
ctacatcaaccacttttctgtcggaaacgtaggcacaattagtcgaactatgtgatcaatcatttgtgttctggtgtgcattttatttatttgttttctt |
793 |
Q |
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||||| ||||||| | |||||||| |||||| ||||||||| | |||| |||||||||||| ||||||| | |||||| ||||||| | ||||||||| |
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| T |
4008795 |
ctacaacaaccaccctactgtcggagacgtagacacaattagccaaactttgtgatcaatca-ttgtgtttttctgtgca-tttatttttctgttttctt |
4008892 |
T |
|
| Q |
794 |
taga |
797 |
Q |
| |
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|||| |
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|
| T |
4008893 |
taga |
4008896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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