View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13285_high_18 (Length: 266)
Name: NF13285_high_18
Description: NF13285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13285_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 5 - 256
Target Start/End: Complemental strand, 37307072 - 37306821
Alignment:
| Q |
5 |
cacgacaataaaacaaactgcgatggtgataatacgcagatgnnnnnnnnnctttaattaacaaataattaaggaaaaagtctgtgttgaaattgatata |
104 |
Q |
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| T |
37307072 |
cacgacaataaaacaaactgcgatggtgataatacgcagatgtttttttttctttaattaacaaataactaaggaaaaagtctgtgttgaaattgatata |
37306973 |
T |
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| Q |
105 |
cgctttcgttgacacgtacttcggcatgaaaaactaacgaagaacgcaacgcctatcaaaagcgatgattattaactaagtaatacataattcaaagaag |
204 |
Q |
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| T |
37306972 |
cgctttcgttgacacgtacttcggcatgaaaaactaacgaagaacgcaacgcctatcaaaagcgatgattattaactaagtaatacataatacaaagaag |
37306873 |
T |
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| Q |
205 |
aaaacagtggaatgtgagagtgaaacgtactatgaaactgaaacagcctttg |
256 |
Q |
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| T |
37306872 |
aaaacagtggaatgtgagagtgaaacgtactatgaaactgaaacagcctttg |
37306821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 63 - 148
Target Start/End: Original strand, 7842039 - 7842124
Alignment:
| Q |
63 |
taacaaataattaaggaaaaagtctgtgttgaaattgatatacgctttcgttgacacgtacttcggcatgaaaaactaacgaagaa |
148 |
Q |
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| T |
7842039 |
taacaaataattaagaaacaagtctgtgttgaaattgaattacgctttcgttgacacgtacttcggcatgagaaactaacaaagaa |
7842124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 7842195 - 7842235
Alignment:
| Q |
214 |
gaatgtgagagtgaaacgtactatgaaactgaaacagcctt |
254 |
Q |
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| T |
7842195 |
gaatgtgagagtgaaacatactatgaatctgaaacatcctt |
7842235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 16663774 - 16663814
Alignment:
| Q |
214 |
gaatgtgagagtgaaacgtactatgaaactgaaacagcctt |
254 |
Q |
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| T |
16663774 |
gaatgtgagagtgaaacgtactatgaatctgaaacaacctt |
16663814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 17638134 - 17638174
Alignment:
| Q |
214 |
gaatgtgagagtgaaacgtactatgaaactgaaacagcctt |
254 |
Q |
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| T |
17638134 |
gaatgtgagagtgaaacgtactatgaatctgaaacaacctt |
17638174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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