View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13285_high_8 (Length: 476)
Name: NF13285_high_8
Description: NF13285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13285_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 35 - 460
Target Start/End: Complemental strand, 3593946 - 3593521
Alignment:
| Q |
35 |
cattttagccaaataagatctgaatgtgaattatgtgatccagttacatcaccaaactctgagaataagaatatcttctagggtgcaaattcatgtagta |
134 |
Q |
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| T |
3593946 |
cattttagccaaataagatctgaatgtgaattatgtgatccagttacatcaccaaactctgagaataagaatatcttctagggtgcaaattcatgtagta |
3593847 |
T |
|
| Q |
135 |
ctacagaggtctattttttgttggttaatagctcagcaataatataagtaacgacaagcaaaaacaaacattagaaataaacactatggaccaagatacc |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3593846 |
ctacagaggtctattttttgttggttaatagctcagcaataatataagtaacgacaagcaaaaacaaacattagaaatgaacactatggaccaagatacc |
3593747 |
T |
|
| Q |
235 |
ctacactgttacttgtattaatttatgaaactaagacaaaaatgaaaacatcatgtgatgattatgaactacaagcccacataatagtagcaataaaata |
334 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3593746 |
ctacactgttacttgtattaatttatgaaactaaaacaaaaatgaaaacatcatgtgatgattatgaactacaagcccacataatagtagcaataaaata |
3593647 |
T |
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| Q |
335 |
ttagcaaccataattctttcattctggaccagtaacaaagaatgattctcaacaagtggttgtgatgaatattgagcaatcaaatcattgttatatcact |
434 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3593646 |
ttagcaaccataattctttcattctggaccagtaacaaagaatgattctcaacaagtggttgtgatgaatattgagcaatcaaatcattgttatatcact |
3593547 |
T |
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| Q |
435 |
ccaacatactatatccataagaatct |
460 |
Q |
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|||||||||||||||||||||||||| |
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| T |
3593546 |
ccaacatactatatccataagaatct |
3593521 |
T |
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