View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13285_low_10 (Length: 418)
Name: NF13285_low_10
Description: NF13285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13285_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 41275364 - 41275772
Alignment:
| Q |
1 |
tcttgatgagaggattgcgttaaaaacgagcgaaaatagtgaagttgtcattcctactcggnnnnnnngaaatcccaggagtagagttgagaagattgac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
41275364 |
tcttgatgagaggattgcgttaaaaacgagcgaaaatagtgaagatgtcattcctactcggaaaaaaagaaatcccaggagtagagttgagaagattgac |
41275463 |
T |
|
| Q |
101 |
gaacttctaagggaatactcggtaccagctgatttggtcagtctggactggnnnnnnntgaaaatacctccagttcttccttcttcggagcatgcatttt |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41275464 |
gaacttctaagggaatactcagtaccagctgatttggtcagtctggactggaaaaaaatgaaaatacctccagttcttccttcttcggagcatgcatttt |
41275563 |
T |
|
| Q |
201 |
tgttcaagttgatgcaaccaatgaaggtgaacagcttattactataatttcatcactcgaccacactttctttggttttactcttcttatagtagtttag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41275564 |
tgttcaagttgatgcaaccaatgaaggtgagcagcttattactataatttcatcactggaccacactttctttggttttactcttcttatagtagtttag |
41275663 |
T |
|
| Q |
301 |
atcttttcattgctgagaagcaagaaagctttcaacttaatggcttaaaacccgatggcttaagttggcaagtcaaggttcataaatatttctttggttt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41275664 |
atcttttcattgctgagaagcaagaaagctttcaacttaatggtttaaaacccgatggcttaagttggcaagtcaaggttcataaatatttctttggttt |
41275763 |
T |
|
| Q |
401 |
tactccctc |
409 |
Q |
| |
|
||||||||| |
|
|
| T |
41275764 |
tactccctc |
41275772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University