View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13285_low_11 (Length: 408)
Name: NF13285_low_11
Description: NF13285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13285_low_11 |
 | |
|
| [»] scaffold0011 (3 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 138 - 391
Target Start/End: Complemental strand, 16383440 - 16383187
Alignment:
| Q |
138 |
acatattggtgattttccttattatcnnnnnnngaagatcattaatgaccaaaaggaaatgccactagttgtttatgtgtctcgtgaaaaaagaccacat |
237 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16383440 |
acatattgatgattttccttattatctttttttgaagatcattaatgaccaaaaggaaatgccactagttgtttatgtgtctcgtgaaaaaagaccacat |
16383341 |
T |
|
| Q |
238 |
gttcctcatagatacaaaggaggagctctcaatacattggtgtgtactcatttaatttgatctctaaacaatcctcataattttctcaatgcatatgata |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||| ||| |
|
|
| T |
16383340 |
gttcctcatagatacaaaggaggagctctcaatacattggtgtgtactcatttaatttaatctctaaacaatgctcataattttctcaatacatattata |
16383241 |
T |
|
| Q |
338 |
tgcatatacttatcatttaaacatttcatcaaatgtgattacagcttagggtat |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16383240 |
tgcatatacttatcatttaaacatttcatcaaatgtgattacagcttagggtat |
16383187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 11 - 137
Target Start/End: Complemental strand, 16384415 - 16384289
Alignment:
| Q |
11 |
gaaatttggaagcaacccaaagaatctttgtatggtgactgatagactttctcggattgaggtacccacatgacttaatgaataatgactatatctatat |
110 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
16384415 |
gaaatttggaagcaactcaaagaatctttgtatggtgactgatagactttctcggattgaggtacccacatgacttaacgaataatgactatatctatat |
16384316 |
T |
|
| Q |
111 |
aaattatgtagaataatttagttaaat |
137 |
Q |
| |
|
||||||||| ||||||||||||||||| |
|
|
| T |
16384315 |
aaattatgtggaataatttagttaaat |
16384289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 2e-50; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 171 - 300
Target Start/End: Complemental strand, 17582836 - 17582707
Alignment:
| Q |
171 |
gaagatcattaatgaccaaaaggaaatgccactagttgtttatgtgtctcgtgaaaaaagaccacatgttcctcatagatacaaaggaggagctctcaat |
270 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| || ||| |
|
|
| T |
17582836 |
gaagattattaatgacgaaaaggaaatgccactggttgtttatgtgtctcgtgaaagaagaccagatgttcctcatagatacaaaggaggagcacttaat |
17582737 |
T |
|
| Q |
271 |
acattggtgtgtactcatttaatttgatct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
17582736 |
acattggtgtgtactcatttaatttgatct |
17582707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 283
Target Start/End: Original strand, 271402 - 271480
Alignment:
| Q |
205 |
gttgtttatgtgtctcgtgaaaaaagaccacatgttcctcatagatacaaaggaggagctctcaatacattggtgtgta |
283 |
Q |
| |
|
|||||||||||||||||||||| ||| ||| ||||||| | || ||||||||| || ||||||||||||||||||| |
|
|
| T |
271402 |
gttgtttatgtgtctcgtgaaagaaggccatcacttcctcacaaattcaaaggaggtgccctcaatacattggtgtgta |
271480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 270961 - 271002
Alignment:
| Q |
33 |
aatctttgtatggtgactgatagactttctcggattgaggta |
74 |
Q |
| |
|
|||||| ||||||||||||| |||| |||||||||||||||| |
|
|
| T |
270961 |
aatcttcgtatggtgactgacagaccttctcggattgaggta |
271002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 171 - 285
Target Start/End: Original strand, 15181 - 15295
Alignment:
| Q |
171 |
gaagatcattaatgaccaaaaggaaatgccactagttgtttatgtgtctcgtgaaaaaagaccacatgttcctcatagatacaaaggaggagctctcaat |
270 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||| |
|
|
| T |
15181 |
gaagatcattaatgaccaaaaagaaatgccactagttgtttatgtgtctcgtgaaaaaagaccaaatgttcctcacagattcaaaggaggagctctcaat |
15280 |
T |
|
| Q |
271 |
acattggtgtgtact |
285 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
15281 |
acattggtatgtact |
15295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 14889 - 14954
Alignment:
| Q |
12 |
aaatttggaagcaacccaaagaatctttgtatggtgactgatagactttctcggattgaggtaccc |
77 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
14889 |
aaattcggaagcaacctaaagaatctttgtatggtgactgatagaccttctcggatcgaggtaccc |
14954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 349 - 389
Target Start/End: Original strand, 15461 - 15501
Alignment:
| Q |
349 |
atcatttaaacatttcatcaaatgtgattacagcttagggt |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15461 |
atcatttaaacatttcatcaaatgtgattacagcttagggt |
15501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University