View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13285_low_13 (Length: 375)
Name: NF13285_low_13
Description: NF13285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13285_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 37 - 358
Target Start/End: Original strand, 56165181 - 56165502
Alignment:
| Q |
37 |
attctaatttttgcgaagttattgaatggataataagtacagaattttcaatattacaggcctggtttcattcctaccagcattaggaccatttggattg |
136 |
Q |
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| T |
56165181 |
attctaatttttgcgaagttattgaatggataataagtacagaattttcaatattacaggcctggtttcattcctaccagcattaggaccatttggattg |
56165280 |
T |
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| Q |
137 |
gtgtgactgctgcgattcctcttgttttgttcgtgcggttaagcgattgacagagcttgcagcagaattttgggttcaatatagtaaggaaagagattta |
236 |
Q |
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| T |
56165281 |
gtgtgactgctgcgattcctcttgttttgttcgtgcggttaagcgattgacagagcttgcagcagaattttgggttcaatatagtaaggaaagagattta |
56165380 |
T |
|
| Q |
237 |
attaagaagtggaactttggaggttaatagcatattggtttacaccaagtctgttggtgtgttttgccttccaaatcgaaattcagtttcagcttcatgt |
336 |
Q |
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| T |
56165381 |
attaagaagtggaactttggaggttaatagcatattggtttacaccaagtctgttggtgtgttttgccttccaaatcgaaattcagtttcagcttcatgt |
56165480 |
T |
|
| Q |
337 |
tgttcaacattctccatctcgc |
358 |
Q |
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| T |
56165481 |
tgttcaacattctccatctcgc |
56165502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 8e-43; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 95 - 303
Target Start/End: Original strand, 44262706 - 44262911
Alignment:
| Q |
95 |
ggcctggtttcattcctaccagcattaggaccatttggattggtgtgactgctgcgattcctcttgttttgttcgtgcggttaagcgattgacagagctt |
194 |
Q |
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| T |
44262706 |
ggcctgctttcattcctacaagcattaggacagtctggtttggcatgactactgcaattgttgttgttctgtttgtgtagttaagcgatttacagagctt |
44262805 |
T |
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| Q |
195 |
gcagcagaattttgggttcaatatagtaaggaaagagatttaattaagaagtggaactttggaggtt-aatagcatattggtttacaccaagtctgttgg |
293 |
Q |
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| T |
44262806 |
gcagcagagttttgggttcaatatagtaaggaaggagat----ctaaggagaggagctttggaggttaaatagcatattggtttacaccaagtctgttgg |
44262901 |
T |
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| Q |
294 |
tgtgttttgc |
303 |
Q |
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|||||||||| |
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| T |
44262902 |
tgtgttttgc |
44262911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 299 - 356
Target Start/End: Original strand, 44263708 - 44263765
Alignment:
| Q |
299 |
tttgccttccaaatcgaaattcagtttcagcttcatgttgttcaacattctccatctc |
356 |
Q |
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| T |
44263708 |
tttgccttccaaatccaaattcagtttcagcttcatcttgttcaacattctccatctc |
44263765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 223
Target Start/End: Original strand, 44259653 - 44259687
Alignment:
| Q |
189 |
gagcttgcagcagaattttgggttcaatatagtaa |
223 |
Q |
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| T |
44259653 |
gagcttgcagcagaattttgggttcaatatcgtaa |
44259687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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