View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13285_low_15 (Length: 320)

Name: NF13285_low_15
Description: NF13285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13285_low_15
NF13285_low_15
[»] chr4 (5 HSPs)
chr4 (24-305)||(48912127-48912408)
chr4 (67-301)||(48958264-48958498)
chr4 (22-308)||(48965442-48965725)
chr4 (147-301)||(48961413-48961567)
chr4 (126-253)||(48951399-48951526)
[»] scaffold0536 (2 HSPs)
scaffold0536 (24-301)||(6293-6570)
scaffold0536 (24-305)||(10277-10556)
[»] chr6 (2 HSPs)
chr6 (30-301)||(12589957-12590231)
chr6 (24-255)||(12483246-12483477)
[»] chr2 (3 HSPs)
chr2 (68-255)||(13440363-13440550)
chr2 (106-305)||(13448479-13448675)
chr2 (165-252)||(13455000-13455087)
[»] chr7 (1 HSPs)
chr7 (46-269)||(3417334-3417557)
[»] chr5 (2 HSPs)
chr5 (68-269)||(28385483-28385684)
chr5 (63-255)||(12540848-12541040)
[»] chr8 (1 HSPs)
chr8 (114-255)||(12641353-12641494)


Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 24 - 305
Target Start/End: Original strand, 48912127 - 48912408
Alignment:
Q  24 gtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaacaac 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  48912127 gtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgtacatatgctttggaagccaatgtcatttttcggataaacaac 48912226  T
Q  124 tttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaaga 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  48912227 tttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagaatgacaatgaagaggagaaaga 48912326  T
Q  224 aaaatggttgccaaaggggtttgaagagagaattatcggaaagaagaaggctatgattattaagggttgggctccacaggtt 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912327 aaaatggttgccaaaggggtttgaagagagaattatcggaaagaagaaggctatgattattaagggttgggctccacaggtt 48912408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 67 - 301
Target Start/End: Complemental strand, 48958498 - 48958264
Alignment:
Q  67 ataactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaatt 166  Q
    ||||||| ||| ||||||||||||||||||||  |||| |||| || |||||||||||||||||||||||||| ||||| ||||||||  ||||||||||    
T  48958498 ataactcagtgttgtacatatgctttggaagcatatgttatttatctgataaacaactttatgagattgcgtgtgggatagaagcatcaggtcacgaatt 48958399  T
Q  167 catatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaagaaaaatggttgccaaaggggtttgaagagagaattatcggaaag 266  Q
      |||||||||||||||| |||||| |||  ||  | || | |||||||||||||| ||| |||||||| || || || ||||||||||  || ||||||    
T  48958398 tgtatgggttgttcctgagaagaaagggaaagaagacgagagtgaagaggagaaaggaaagtggttgccgaaaggattcgaagagagaaacattggaaag 48958299  T
Q  267 aagaaggctatgattattaagggttgggctccaca 301  Q
    ||||| | | |||| |||| ||| ||||| |||||    
T  48958298 aagaaaggtttgatcattagggggtgggccccaca 48958264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 308
Target Start/End: Complemental strand, 48965725 - 48965442
Alignment:
Q  22 cagtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaaca 121  Q
    ||||||| ||||| ||||||||||||||||| || || || | | ||||||| ||| |||||||| ||||||||||||  |||| || |  |||||||||    
T  48965725 cagtgagcgtgcaagagtgtttgagttggctcaattccaagcgacataactcagtgttgtacataagctttggaagcctctgtcgttatcaggataaaca 48965626  T
Q  122 actttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaa 221  Q
     ||||||||||||||||| |  || ||||||||| |||| || || ||||||||| ||||    || ||  |||  ||| |||| | ||||||||||||     
T  48965625 gctttatgagattgcgtgtgcaatagaagcatcgggtcatgattttatatgggttattccccttaataacgggaaagaggatgagagtgaagaggagaag 48965526  T
Q  222 gaaaaatggttgccaaaggggtttgaagagagaattatcggaaagaagaaggctatgattattaagggttgggctccacaggttctg 308  Q
     |||| ||||| |||||||| || ||||||||||  || |||   ||||||| | ||||||||| |||||||||||| |||||||||    
T  48965525 caaaagtggttaccaaagggattcgaagagagaaacattgga---aagaagggtttgattattaggggttgggctccgcaggttctg 48965442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 147 - 301
Target Start/End: Complemental strand, 48961567 - 48961413
Alignment:
Q  147 gaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaagaaaaatggttgccaaaggggtttg 246  Q
    ||||||||| ||||||||||  |||||||||||||||| || ||| |||  | | |||| |  |||||||||||||| || |||||||| || || ||||    
T  48961567 gaagcatcgggtcacgaatttgtatgggttgttcctgagaaaaaagggaaagtggatgagagcgaagaggagaaagacaagtggttgccgaaaggatttg 48961468  T
Q  247 aagagagaattatcggaaagaagaaggctatgattattaagggttgggctccaca 301  Q
    |||||||||  || | ||||||||||| | |||| |||||||| ||||| |||||    
T  48961467 aagagagaaacattgaaaagaagaagggtttgatcattaaggggtgggccccaca 48961413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 253
Target Start/End: Complemental strand, 48951526 - 48951399
Alignment:
Q  126 tatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaagaaa 225  Q
    |||||||||||  ||| ||| |||| |||  || | ||||||||||||||||| || ||||||||  ||| |||| | || | ||| |||||||| ||||    
T  48951526 tatgagattgcaagcgcgatagaagaatcaggttatgaattcatatgggttgtcccagaaaagaaggggaaggagaacgagagtgatgaggagaaggaaa 48951427  T
Q  226 aatggttgccaaaggggtttgaagagag 253  Q
    ||||||| || | || ||||||||||||    
T  48951426 aatggttacccagggagtttgaagagag 48951399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 24 - 301
Target Start/End: Original strand, 6293 - 6570
Alignment:
Q  24 gtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaacaac 123  Q
    ||||||||||| |||||| ||||||||||  ||||||| | ||||||||| ||| ||||||||||||||||||||  ||| | |||  ||||||||||||    
T  6293 gtgagtgtgcatgagtgtctgagttggctagactcgaagccagataactcagtgttgtacatatgctttggaagcttatgccttttcccggataaacaac 6392  T
Q  124 tttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaaga 223  Q
    |||| |||||||| || ||||| ||||||||| ||||| |||||||||||||||||||||| |||||| |||  ||  |||| | ||||||||||||||     
T  6393 tttacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttcctgagaagaaagggaaagaagatgagagtgaagaggagaaagg 6492  T
Q  224 aaaatggttgccaaaggggtttgaagagagaattatcggaaagaagaaggctatgattattaagggttgggctccaca 301  Q
    |||||||||||||||||| || |||||||||| ||||||||||||||||| | ||||||||| |||||||||||||||    
T  6493 aaaatggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccaca 6570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 24 - 305
Target Start/End: Original strand, 10277 - 10556
Alignment:
Q  24 gtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaacaac 123  Q
    ||||||||||| |||||| ||||||||||||||| ||| | |||||  || ||| ||||||| ||||||||||||| |||| ||||||| ||||||||||    
T  10277 gtgagtgtgcatgagtgtctgagttggcttaacttgaagcgagata--tcagtgttgtacatttgctttggaagcctatgttatttttcagataaacaac 10374  T
Q  124 tttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaaga 223  Q
    ||||||||||||||||| || | ||||||||| || |||||||  |||| ||||||||||| |||||| |||  ||| |||| | | |||||||||||||    
T  10375 tttatgagattgcgtgcagggtagaagcatcgggttacgaatttgtatgagttgttcctgagaagaaagggaaagagaatgagagtcaagaggagaaaga 10474  T
Q  224 aaaatggttgccaaaggggtttgaagagagaattatcggaaagaagaaggctatgattattaagggttgggctccacaggtt 305  Q
    ||||||| | || || || |||||||| ||| |||| | ||||||||||| | ||||||||||||||||||| || ||||||    
T  10475 aaaatggctaccgaaaggatttgaagaaagagttattgcaaagaagaagggtttgattattaagggttgggcccctcaggtt 10556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 30 - 301
Target Start/End: Original strand, 12589957 - 12590231
Alignment:
Q  30 gtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaacaactttatg 129  Q
    ||||| |||||| |||||||||| |||||||| | ||||||||| ||| |||||||||||||||| |||  |||  |||| || ||||||||||||||||    
T  12589957 gtgcaagagtgtctgagttggctaaactcgaagcgagataactctgtgttgtacatatgctttgggagcatatgctatttctcagataaacaactttatg 12590056  T
Q  130 agattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaagaaaaatg 229  Q
    ||||| |||| || || ||||||||  | ||||||||| |||||||| |||| || || ||| ||| |||  |||| | ||| ||||| ||| |||||||    
T  12590057 agatttcgtgtggcatagaagcatcaggccacgaattcgtatgggttattcccgagaaaaaagggaaggaagatgagagtgatgaggataaacaaaaatg 12590156  T
Q  230 gttgccaaaggggtttgaagagagaattatcg---gaaagaagaaggctatgattattaagggttgggctccaca 301  Q
    |||||| |  || |||||||||||||  || |   |||||||||||| | |||| |||| ||||||||| |||||    
T  12590157 gttgcctagtggatttgaagagagaaacattgggagaaagaagaagggtttgatcattaggggttgggccccaca 12590231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 255
Target Start/End: Original strand, 12483246 - 12483477
Alignment:
Q  24 gtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaacaac 123  Q
    ||||| ||||| ||||||   |||||||| ||||| || ||||| || || ||| |||||||||||||||| |||| |||  |||| || |||||||| |    
T  12483246 gtgagcgtgcatgagtgtcaaagttggctaaactcaaagcaagaaaattcagtgttgtacatatgctttgggagcctatgcaatttctctgataaacagc 12483345  T
Q  124 tttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaaga 223  Q
    |||| || ||| | ||||| || ||||||||| || |  |||||||||||||||||||||| || ||| ||| |||  |||| |  || |||||||||||    
T  12483346 tttacgaaatttcatgcggaatagaagcatcgggtaaaaaattcatatgggttgttcctgagaaaaaagggaaggaagatgagagcgatgaggagaaaga 12483445  T
Q  224 aaaatggttgccaaaggggtttgaagagagaa 255  Q
    ||| |||||||| ||||| ||||| |||||||    
T  12483446 aaagtggttgccgaagggatttgaggagagaa 12483477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 68 - 255
Target Start/End: Complemental strand, 13440550 - 13440363
Alignment:
Q  68 taactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattc 167  Q
    |||||||||| |||||||||| |||||||||       |||| || ||||||||||| |||||||| |||||||  || |||||||| ||||||  ||||    
T  13440550 taactcggtgttgtacatatgttttggaagcatcaactatttctctgataaacaactatatgagatggcgtgcgcaatagaagcatctagtcacccattc 13440451  T
Q  168 atatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaagaaaaatggttgccaaaggggtttgaagagagaa 255  Q
    ||||||||||||||||| |||||| |||  ||  |||| | ||| || ||||||||||| |||||||||||||| || ||||||||||    
T  13440450 atatgggttgttcctgagaagaaagggaaagaagatgagagtgaggaagagaaagaaaagtggttgccaaagggattcgaagagagaa 13440363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 106 - 305
Target Start/End: Complemental strand, 13448675 - 13448479
Alignment:
Q  106 atttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatga 205  Q
    ||||||| ||||||||||| || ||||| || || | ||| ||||||||  |||||  ||||||||||||||||||||| |||||| |||  ||  ||||    
T  13448675 atttttctgataaacaactatacgagatggcatgtgcgatagaagcatccggtcacccattcatatgggttgttcctgagaagaaagggaaagaagatga 13448576  T
Q  206 caatgaagaggagaaagaaaaatggttgccaaaggggtttgaagagagaattatcggaaagaagaaggctatgattattaagggttgggctccacaggtt 305  Q
     |  ||||| ||||||||||| ||||| || ||||| ||||||||||||| ||||||   |||||||| | |||| |||| ||||||||| |||||||||    
T  13448575 gagcgaagaagagaaagaaaagtggttaccgaagggatttgaagagagaaatatcgg---gaagaagggtttgatcattaggggttgggccccacaggtt 13448479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 252
Target Start/End: Complemental strand, 13455087 - 13455000
Alignment:
Q  165 ttcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaagaaaaatggttgccaaaggggtttgaagaga 252  Q
    ||||||||||||||||| || |||||| |||  ||  |||| |  |||||||||||| |||| |||||||| ||||| ||||||||||    
T  13455087 ttcatatgggttgttccggagaagaaagggaaagaagatgagagcgaagaggagaaacaaaagtggttgccgaagggatttgaagaga 13455000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 46 - 269
Target Start/End: Original strand, 3417334 - 3417557
Alignment:
Q  46 gttggcttaactcgaaacaagataactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaacaactttatgagattgcgtgcgggat 145  Q
    ||||||| |||||  |||||| |||||| ||| |||||||||| |||||||||  |    |||| || ||||||||||| ||||||||||| | ||  ||    
T  3417334 gttggctcaactcacaacaagttaactcagtgttgtacatatgttttggaagcttaaactatttctctgataaacaactatatgagattgcatacgcaat 3417433  T
Q  146 tgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaagaaaaatggttgccaaaggggttt 245  Q
     ||||||||| |||||  ||||||||||||||||| ||| |||||| | |  ||  |||| || ||||| ||||||||||| |||||||| ||||| |||    
T  3417434 agaagcatcgggtcacccattcatatgggttgttcttgagaagaaaggaaaagaagatgagaacgaagaagagaaagaaaagtggttgccgaagggattt 3417533  T
Q  246 gaagagagaattatcggaaagaag 269  Q
    || |||||||  || |||||||||    
T  3417534 gaggagagaaacattggaaagaag 3417557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 68 - 269
Target Start/End: Complemental strand, 28385684 - 28385483
Alignment:
Q  68 taactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattc 167  Q
    |||||| || ||||||||||| |||||||||  |   ||||| || ||||||||||| ||||||||||| ||||   | ||||||||  |||||  ||||    
T  28385684 taactcagttgtgtacatatgttttggaagcataaaccatttctctgataaacaactatatgagattgcatgcgcagtagaagcatcaggtcacccattc 28385585  T
Q  168 atatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaagaaaaatggttgccaaaggggtttgaagagagaattatcggaaaga 267  Q
    ||||||||||||||||| |||||| |||  ||  |||| |  ||||| ||||||||||| ||| |||||||||| ||||| |||||||  || |||||||    
T  28385584 atatgggttgttcctgagaagaaagggaaagaagatgagatcgaagaagagaaagaaaagtggctgccaaagggatttgaggagagaaacattggaaaga 28385485  T
Q  268 ag 269  Q
    ||    
T  28385484 ag 28385483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 255
Target Start/End: Complemental strand, 12541040 - 12540848
Alignment:
Q  63 caagataactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacg 162  Q
    |||| |||||| |||||||||||||| |||||||||  |  |||||| |  || |||||||| ||||||||||| || |   | |||| |  | |||||     
T  12541040 caagttaactcagtggtgtacatatgttttggaagcataaatcatttctttgacaaacaactatatgagattgcatgtgcagtagaaggaatgggtcacc 12540941  T
Q  163 aattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaagaaaaatggttgccaaaggggtttgaagagagaa 255  Q
     ||||||||||||||||||||| |||| | |||  ||  |||| | |||||| ||||||||||| ||| |||| ||||| ||||| |||||||    
T  12540940 cattcatatgggttgttcctgagaagagagggaaagaagatgagactgaagaagagaaagaaaagtggatgccgaagggatttgaggagagaa 12540848  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 114 - 255
Target Start/End: Original strand, 12641353 - 12641494
Alignment:
Q  114 gataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaag 213  Q
    |||||||||||||| ||||||||| |||| || |||   ||  ||||||||||  |||||||||||||||| |||||| |||   |  |||| | |||||    
T  12641353 gataaacaactttacgagattgcgagcggaatagaaaattcaggtcacgaatttgtatgggttgttcctgagaagaaagggaaaaaagatgagagtgaag 12641452  T
Q  214 aggagaaagaaaaatggttgccaaaggggtttgaagagagaa 255  Q
    ||||||||||||| |||||||| || || || ||||||||||    
T  12641453 aggagaaagaaaagtggttgcctaaaggattcgaagagagaa 12641494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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