View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13285_low_20 (Length: 259)

Name: NF13285_low_20
Description: NF13285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13285_low_20
NF13285_low_20
[»] chr7 (2 HSPs)
chr7 (181-243)||(30310656-30310718)
chr7 (187-243)||(42612082-42612138)
[»] chr4 (1 HSPs)
chr4 (175-243)||(34122490-34122558)
[»] chr3 (1 HSPs)
chr3 (186-243)||(27749467-27749524)
[»] chr8 (1 HSPs)
chr8 (181-237)||(3714195-3714251)


Alignment Details
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 30310656 - 30310718
Alignment:
Q  181 aaagattattgttcacacaaagaagaatcatgaaaaacaaagatgaagaatccaaataaaaat 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30310656 aaagattattgttcacacaaagaagaatcatgaaaaacaaagatgaagaatccaaataaaaat 30310718  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 42612082 - 42612138
Alignment:
Q  187 tattgttcacacaaagaagaatcatgaaaaacaaagatgaagaatccaaataaaaat 243  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  42612082 tattgttcacacaaagaagaatcatgaataacaaagatgaagaatccaaatcaaaat 42612138  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 34122558 - 34122490
Alignment:
Q  175 tgaaacaaagattattgttcacacaaagaagaatcatgaaaaacaaagatgaagaatccaaataaaaat 243  Q
    ||||||| || ||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||    
T  34122558 tgaaacagaggttattgttcacacaaagaataatcatgaataacaaagatgaagaatccaaatcaaaat 34122490  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 186 - 243
Target Start/End: Original strand, 27749467 - 27749524
Alignment:
Q  186 ttattgttcacacaaagaagaatcatgaaaaacaaagatgaagaatccaaataaaaat 243  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||    
T  27749467 ttattgttcacacaaagaataatcatgaataacaaagatgaagaatccaaatcaaaat 27749524  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 181 - 237
Target Start/End: Complemental strand, 3714251 - 3714195
Alignment:
Q  181 aaagattattgttcacacaaagaagaatcatgaaaaacaaagatgaagaatccaaat 237  Q
    |||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  3714251 aaaggttattgttcacaaaaagaagaatcatgaataacaaagatgaagaatccaaat 3714195  T

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