View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13285_low_22 (Length: 251)
Name: NF13285_low_22
Description: NF13285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13285_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 30570988 - 30571213
Alignment:
| Q |
11 |
caaaggtaaagaagggaaagtgataatcatagacgcagtgatggggaatgagaaggaagacaatgaatcaattgaagcacaattgttctatgatttggag |
110 |
Q |
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| T |
30570988 |
caaaggtaaagaagggaaagtgataatcatagacgcagtgatggggaatgagaaggaagacaatgaatcaattgaagcacaattgttctatgatttggag |
30571087 |
T |
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| Q |
111 |
atgatggtgttggtcaatggaaaagagagaaatgagaaagaatggtctaatttgtttttatctgctggttttagtaactacaagataactcatggtcttg |
210 |
Q |
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| T |
30571088 |
atgatggtgttggtcaatggaaaagagagaaatgaaaaagaatggtctaatttgtttttatctgctggttttagtaactacaagataactcatggtcttg |
30571187 |
T |
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| Q |
211 |
gttttaagtctctcattgaggttttt |
236 |
Q |
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| T |
30571188 |
gttttaagtctctcattgaggttttt |
30571213 |
T |
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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 201
Target Start/End: Original strand, 31684947 - 31685019
Alignment:
| Q |
129 |
ggaaaagagagaaatgagaaagaatggtctaatttgtttttatctgctggttttagtaactacaagataactc |
201 |
Q |
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| T |
31684947 |
ggaaaagagagaaacgagaaagaatggattaagttgatttcctctgctggttttagtgactacaagattactc |
31685019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 201
Target Start/End: Original strand, 31704262 - 31704334
Alignment:
| Q |
129 |
ggaaaagagagaaatgagaaagaatggtctaatttgtttttatctgctggttttagtaactacaagataactc |
201 |
Q |
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| T |
31704262 |
ggaaaagagagaaacaagaaagaatggattaagttgatttcctctgctggttttagcgactacaagattactc |
31704334 |
T |
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