View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13285_low_27 (Length: 207)
Name: NF13285_low_27
Description: NF13285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13285_low_27 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 207
Target Start/End: Complemental strand, 24225077 - 24224889
Alignment:
| Q |
19 |
gacaacaacctccctcacgatacccacgacacctactccatcaccttcgactccaccttcacaatccaatccctcttaacctccacaccctccgtcgtcg |
118 |
Q |
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| T |
24225077 |
gacaacaacctccctcacgatacccacgacacctactccatcaccttcgactccaccttcacaatccaatccctcttaacctccacaccctccgtcgtcg |
24224978 |
T |
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| Q |
119 |
acacctggctcctcgaaaccctccacctccaccccccattccccgtcctcgtcggcctcgacgtcgaatggcgccccaatttcaaacgc |
207 |
Q |
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| T |
24224977 |
acacctggctcctcgaaaccctccgcctccaccccccattccccgtcctcgtcggcctcgacgtcgaatggcgccccaatttcaaacgc |
24224889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 24229050 - 24229124
Alignment:
| Q |
19 |
gacaacaacctccctcacgatacccacgacacctactccatcaccttcgactccaccttcacaatccaatccctc |
93 |
Q |
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|||||| ||||||| |||| |||||| ||||||||||||||||| ||||| ||||| ||||||||||| ||||| |
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| T |
24229050 |
gacaaccacctcccctacgacacccacaacacctactccatcaccatcgacaccaccctcacaatccaaaccctc |
24229124 |
T |
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