View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13285_low_3 (Length: 624)
Name: NF13285_low_3
Description: NF13285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13285_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 14 - 608
Target Start/End: Original strand, 45756726 - 45757311
Alignment:
| Q |
14 |
tcatcaaactaactataacgatagaaaatacatagcagcacataattcaacaataagtcaagctactaagcctctattaaactccgtgggaagcagcatc |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
45756726 |
tcatcaaactaactataacgatagaaaatacatagcagcacataattcaacaataagtcaagctactaagcctctattacactccgtgggaagcagcatc |
45756825 |
T |
|
| Q |
114 |
cgtcggttatgaaatatcatatgattcgtatccactatacaagttatattttctaaaatgagacatgcatttttaaagtactggatttcgcgttatttat |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
45756826 |
cgtcggttatgaaatatcatatgattcgtatccactatacaagttatattttctaaaatgagacatgcatttttaaagtaccggatttcgcattatttat |
45756925 |
T |
|
| Q |
214 |
ttcgggtagctttcgcgtagctttgggtgaatgatcctaaaaacgatccaccaatcaaactaatgnnnnnnngttaactagcatcattcataaacaagca |
313 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
45756926 |
ttcgggtagctttcacgtagctttgggtgaatgatcctaaaaacgatccaccaatcaaactaatg-aaaaaagttaactagcatcattcataaacaagca |
45757024 |
T |
|
| Q |
314 |
aatacaagatcaatttaactatatgattctcttaattttccctcnnnnnnnnnnnnnnnnnctagataaaaaacatgaacataatccttctccaacatac |
413 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
45757025 |
aatacaagatcaatttgactatatgattctcttaattttccctc----cttttttttttttctagataaaaaacatgaatataatccttctccaacatac |
45757120 |
T |
|
| Q |
414 |
atagctcaacctaaaaatcatcataatttaaaattnnnnnnnnnnnnnnnncaaattttatagtgttcatgcataaataggaagaaaatagatagattac |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
45757121 |
atagctcaacctaaaaatcatcataatttaaaat----aaaataaaataaacaaattttatagtgttgatgcataaataggaagaaaatagatagattac |
45757216 |
T |
|
| Q |
514 |
atttctcaattttcgaacttgaccacgaagaccggtaatttcatcatcgaaatcaccaacaggatcaatacgcaattgaatttcatcggaggatg |
608 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45757217 |
atttctcaattttcgaacttgaccacgaagaccggtaatttcatcatcgaaatcaccaacaggatcaatacgcaattgaatttcatcggaggatg |
45757311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 34152003 - 34152057
Alignment:
| Q |
25 |
actataacgatagaaaatacatagcagcacataattcaacaataagtcaagctac |
79 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34152003 |
actataacaaaagaaaatacatagcagcacataattcaacaataagtcaagctac |
34152057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 34139401 - 34139441
Alignment:
| Q |
39 |
aaatacatagcagcacataattcaacaataagtcaagctac |
79 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
34139401 |
aaatacatagcagcacataattcaacaataagtccagctac |
34139441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 274
Target Start/End: Original strand, 34139541 - 34139576
Alignment:
| Q |
239 |
ggtgaatgatcctaaaaacgatccaccaatcaaact |
274 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |
|
|
| T |
34139541 |
ggtgaatgatcctaaaaacgatcgaccaatcaaact |
34139576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 274
Target Start/End: Original strand, 34152157 - 34152192
Alignment:
| Q |
239 |
ggtgaatgatcctaaaaacgatccaccaatcaaact |
274 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |
|
|
| T |
34152157 |
ggtgaatgatcctaaaaacgatcgaccaatcaaact |
34152192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 34130764 - 34130801
Alignment:
| Q |
25 |
actataacgatagaaaatacatagcagcacataattca |
62 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
34130764 |
actataacaaaagaaaatacatagcagcacataattca |
34130801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 34136389 - 34136426
Alignment:
| Q |
25 |
actataacgatagaaaatacatagcagcacataattca |
62 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
34136389 |
actataacaaaagaaaatacatagcagcacataattca |
34136426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University