View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13285_low_6 (Length: 524)
Name: NF13285_low_6
Description: NF13285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13285_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 452; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 1 - 505
Target Start/End: Complemental strand, 36525170 - 36524662
Alignment:
| Q |
1 |
tgcagcattcagatggggattccaagggacatttgaagaatatttttccgggtattttgtggcatttggaacttgattttctgcaaatacattcgcattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36525170 |
tgcagcattcagatggggattccaagggacatttgaagaatatttttccgggtattttgtggcatttggaacttgattttctgcaaatacattcgcattt |
36525071 |
T |
|
| Q |
101 |
gagtgatgggatgaagtcttaggtactgcatcactcacatgagctttaactatcatgtcgtataaagatcactttgcttggtcagtcaacacgctattgg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36525070 |
gagtgatgggatgaagtcttaggtactgcatcactcacatgagctttaactatcatgtcctataaagatcactttgcttggtcagtcaacacgctattgg |
36524971 |
T |
|
| Q |
201 |
cttccccaatcaacttgaacgcagcttctgcaccagcaaatttatttttatcaggatgaagtagcaatgcgagttttctgtactgtttccttatgatggc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||| || |
|
|
| T |
36524970 |
cttccccaatcaacttgaacgcagcttctgcaccagtaaatttatttttatcaagatgaagtagcaatccgagttttctgtactgtttctttatgattgc |
36524871 |
T |
|
| Q |
301 |
ttcctcggagagactttctgtctgaagaattccataccagtccatatcatacttagacagcttgttgagtgcagcattgtgaacctcacaaacagtaagg |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
36524870 |
ttcctcggagagactttctgtctgaagaattccataccagtccatatcagacttagacagcttgttaagtgcagcattgtgaacctcacaaacagtaagg |
36524771 |
T |
|
| Q |
401 |
atctgagcaatgttttcaacatcagcatacatcgttttggccttgttagcaaacttcagtgcctctagaaattcactcc----cattctactttccgcca |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| |
|
|
| T |
36524770 |
atctgagcaatgttttcaacatcagcatacatcgttttggccttgttagcaaacttcagtgcctctacaaattcacccctttgcattctactttccgcca |
36524671 |
T |
|
| Q |
497 |
gttgcctag |
505 |
Q |
| |
|
||||||||| |
|
|
| T |
36524670 |
gttgcctag |
36524662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 32 - 476
Target Start/End: Complemental strand, 36531471 - 36531030
Alignment:
| Q |
32 |
tttgaagaatatttttccgggtattttgtggcatttggaacttgattttctgcaaatacattcgcatttgagtgatgggatgaagtcttaggtactgcat |
131 |
Q |
| |
|
||||||||| |||||| | | | |||||| ||||| |||||||||||| ||||| | ||| |||| ||| |||||||||| ||||||| | ||||| |
|
|
| T |
36531471 |
tttgaagaacattttttctgatgttttgttgcattaggaacttgatttgctgcaggt---ttcccattagagggatgggatgaggtcttagatgctgcag |
36531375 |
T |
|
| Q |
132 |
cactcacatgagctttaactatcatgtcgtataaagatcactttgcttggtcagtcaacacgctattggcttccccaatcaacttgaacgcagcttctgc |
231 |
Q |
| |
|
| || ||||| |||||||| | |||||||||||||| | | |||||| ||| ||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
36531374 |
ctctaacatgggctttaacctttatgtcgtataaagaccgcgttgctttatcactcaacaccctattggcttccccaatcaacttgaaagcagcttctgc |
36531275 |
T |
|
| Q |
232 |
accagcaaatttatttttatcaggatgaagtagcaatgcgagttttctgtactgtttccttatgatggcttcctcggagagactttctgtctgaagaatt |
331 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||| || || ||||||||||| ||||||| ||||||||||| | |||| |||||||||| | |
|
|
| T |
36531274 |
accagcagatttatttttatcaggatgaagtagcagtgcaagcttcttgtactgtttctttatgattgcttcctcggataatttttcagtctgaagaact |
36531175 |
T |
|
| Q |
332 |
ccataccagtccatatcatacttagacagcttgttgagtgcagcattgtgaacctcacaaacagtaaggatctgagcaatgttttcaacatcagcataca |
431 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
36531174 |
ccataccagtccatatcatacttagacagcttgttgagtgcagcattgtgaacctcacaaacagcaaggatctgagcaatgttttcaacatcagcataga |
36531075 |
T |
|
| Q |
432 |
tcgttttggccttgttagcaaacttcagtgcctctagaaattcac |
476 |
Q |
| |
|
| |||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
36531074 |
gccttttggccttgttagcaaacttcagtgcatctacaaattcac |
36531030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 156 - 476
Target Start/End: Original strand, 26305989 - 26306309
Alignment:
| Q |
156 |
tgtcgtataaagatcactttgcttggtcagtcaacacgctattggcttccccaatcaacttgaacgcagcttctgcaccagcaaatttatttttatcagg |
255 |
Q |
| |
|
|||| |||||||||| | |||||||||| |||| || ||||||||||| |||||||||||||| |||||||| ||||||| |||||||||||||||||| |
|
|
| T |
26305989 |
tgtcatataaagatcgttgtgcttggtcactcaaaaccctattggcttctccaatcaacttgaaagcagcttcagcaccagaaaatttatttttatcagg |
26306088 |
T |
|
| Q |
256 |
atgaagtagcaatgcgagttttctgtactgtttccttatgatggcttcctcggagagactttctgtctgaagaattccataccagtccatatcatactta |
355 |
Q |
| |
|
||||||||||| |||||| ||||||||||| || ||||||| ||||||||||||| || | ||||||||||||| |||| ||||||| ||| || || |
|
|
| T |
26306089 |
atgaagtagcagtgcgagctttctgtactgcgtctttatgattgcttcctcggagaatctatgtgtctgaagaatttcataatagtccatttcaaacata |
26306188 |
T |
|
| Q |
356 |
gacagcttgttgagtgcagcattgtgaacctcacaaacagtaaggatctgagcaatgttttcaacatcagcatacatcgttttggccttgttagcaaact |
455 |
Q |
| |
|
|| || || || ||||||||| |||||||||||||||| | ||||| ||||||||||||||| ||| ||||||||| |||||||||| |||||||||| |
|
|
| T |
26306189 |
gagagtttcttcagtgcagcaatgtgaacctcacaaactgcaaggacctgagcaatgttttccacaccagcatacagatttttggcctttttagcaaact |
26306288 |
T |
|
| Q |
456 |
tcagtgcctctagaaattcac |
476 |
Q |
| |
|
||||||| |||| ||||||| |
|
|
| T |
26306289 |
tcagtgcatctacgaattcac |
26306309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 362 - 476
Target Start/End: Complemental strand, 36552656 - 36552542
Alignment:
| Q |
362 |
ttgttgagtgcagcattgtgaacctcacaaacagtaaggatctgagcaatgttttcaacatcagcatacatcgttttggccttgttagcaaacttcagtg |
461 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
36552656 |
ttgttgagtgcagcattgtgaacctcacaaacagtaaggatctgagcaatgttttcaacatcagcatacagctttttggccttgttagcaaacttcagtg |
36552557 |
T |
|
| Q |
462 |
cctctagaaattcac |
476 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
36552556 |
cctctacaaattcac |
36552542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 275 - 390
Target Start/End: Original strand, 20716227 - 20716342
Alignment:
| Q |
275 |
tttctgtactgtttccttatgatggcttcctcggagagactttctgtctgaagaattccataccagtccatatcatacttagacagcttgttgagtgcag |
374 |
Q |
| |
|
||||||||||||||| || |||| | |||||||||||| |||||||||||||||||| ||||||||||||| ||| || |||| || ||| ||||||||| |
|
|
| T |
20716227 |
tttctgtactgtttctttgtgattgtttcctcggagagtctttctgtctgaagaatttcataccagtccatttcacacctagagagtttgctgagtgcag |
20716326 |
T |
|
| Q |
375 |
cattgtgaacctcaca |
390 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
20716327 |
cattgtgaacctcaca |
20716342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 161 - 414
Target Start/End: Original strand, 47090535 - 47090788
Alignment:
| Q |
161 |
tataaagatcactttgcttggtcagtcaacacgctattggcttccccaatcaacttgaacgcagcttctgcaccagcaaatttatttttatcaggatgaa |
260 |
Q |
| |
|
|||||||| | ||||| ||||||| |||| || || || || ||| | ||||||||||| ||||| ||||| |||||| ||||||||||||||||||||| |
|
|
| T |
47090535 |
tataaagaacgctttgtttggtcactcaatactctgttagcatccacgatcaacttgaaagcagcctctgccccagcagatttatttttatcaggatgaa |
47090634 |
T |
|
| Q |
261 |
gtagcaatgcgagttttctgtactgtttccttatgatggcttcctcggagagactttctgtctgaagaattccataccagtccatatcatacttagacag |
360 |
Q |
| |
|
|||||| ||| || ||| | ||||| ||| |||| | ||||| || | | | || ||| |||||||||||||||||||||||||| || |||| || |
|
|
| T |
47090635 |
gtagcagtgcaagctttttatactgcttctttattgttgcttcatcagtaaatttatcagtcagaagaattccataccagtccatatcagacatagagag |
47090734 |
T |
|
| Q |
361 |
cttgttgagtgcagcattgtgaacctcacaaacagtaaggatctgagcaatgtt |
414 |
Q |
| |
|
||||| |||||||| |||||||||||| ||||||||||||| | |||||| |
|
|
| T |
47090735 |
tttgttctgtgcagcacagtgaacctcacaggcagtaaggatctgcgtaatgtt |
47090788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 258
Target Start/End: Complemental strand, 6791535 - 6791477
Alignment:
| Q |
200 |
gcttccccaatcaacttgaacgcagcttctgcaccagcaaatttatttttatcaggatg |
258 |
Q |
| |
|
||||||||||||| ||| || |||||||||||||||||||| || ||||| |||||||| |
|
|
| T |
6791535 |
gcttccccaatcagcttaaatgcagcttctgcaccagcaaacttgtttttgtcaggatg |
6791477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 200 - 262
Target Start/End: Original strand, 49156796 - 49156858
Alignment:
| Q |
200 |
gcttccccaatcaacttgaacgcagcttctgcaccagcaaatttatttttatcaggatgaagt |
262 |
Q |
| |
|
||||| ||||||| ||| || |||||||| ||||| ||||| || |||||||||||||||||| |
|
|
| T |
49156796 |
gcttctccaatcagcttaaatgcagcttcagcaccggcaaacttgtttttatcaggatgaagt |
49156858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University