View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13285_low_7 (Length: 502)
Name: NF13285_low_7
Description: NF13285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13285_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 28519259 - 28518944
Alignment:
| Q |
1 |
caaaagagcaacaactatgtcgcgttctaatttcaatcttctcttagcagtcagaggtaaaccaatgaagttccatgatcttgttgtgtgtagcttacgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
28519259 |
caaaagagcaacaactatgtcgcgttctaatttcaatcttctcttggcagtcagaggtaaaccaatgaagttccatgatcttgttgtgtgtaacttacgg |
28519160 |
T |
|
| Q |
101 |
tattgatttttaaacaccaaaagtacttcatccatggctacacatgcnnnnnnnnnnnnnnnnnnnnnnncaatatctacaaattttaagctagagaaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
28519159 |
tattgatttttaaacaccaaaagtacttcatccatggctacacatacaaaaaaatattcgaagaaaaaaacaatatctacaaattttaagctagagaaaa |
28519060 |
T |
|
| Q |
201 |
aattatacacaccagataacttattgacttcatcttctgacagttttgcagcaaatgcattgaagctctttgtgtagctatatacaatggactctttggc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28519059 |
aattatacacaccagataacttattgacttcatcttctgacagttttgcagcaaatgcattgaagctctttgtgtagctatatacaatggactctttggc |
28518960 |
T |
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| Q |
301 |
ttcatgataactaagt |
316 |
Q |
| |
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|||||||||||||||| |
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| T |
28518959 |
ttcatgataactaagt |
28518944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 396 - 482
Target Start/End: Complemental strand, 28518866 - 28518780
Alignment:
| Q |
396 |
taaagaaatgcttgattgaattaataaggttaccttcccttcacagaagatagaacatttaattgagtctcaagtgcaatgtctcta |
482 |
Q |
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| T |
28518866 |
taaagaaatgcttgattgaattaataaggttaccttcccttcacagaagatagaacatttaattgagtctcaagtgcaatgtctcta |
28518780 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 214 - 304
Target Start/End: Original strand, 12728863 - 12728953
Alignment:
| Q |
214 |
agataacttattgacttcatcttctgacagttttgcagcaaatgcattgaagctctttgtgtagctatatacaatggactctttggcttca |
304 |
Q |
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||||||||| ||| ||||||| || || ||||| |||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
12728863 |
agataacttgttggcttcatcctcggatagtttagcagcaaatgcattaaagctctttgtgtagctgtatactatggactctttggcttca |
12728953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 212 - 304
Target Start/End: Complemental strand, 34291236 - 34291144
Alignment:
| Q |
212 |
ccagataacttattgacttcatcttctgacagttttgcagcaaatgcattgaagctctttgtgtagctatatacaatggactctttggcttca |
304 |
Q |
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| T |
34291236 |
ccagataacttgtttgcttcatcctcagacagtttagcagcaaatgcattaaagctctttgtgtagctgtatactatggattctttggcttca |
34291144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 12728763 - 12728832
Alignment:
| Q |
39 |
ttctcttagcagtcagaggtaaaccaatgaagttccatgatcttgttgtgtgtagcttacggtattgatt |
108 |
Q |
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|||||||||| |||| ||||| ||||| |||| |||||||||||||||||||||||| ||||||||||| |
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| T |
12728763 |
ttctcttagctgtcaatggtaatccaataaagtcccatgatcttgttgtgtgtagcttgcggtattgatt |
12728832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 34291425 - 34291362
Alignment:
| Q |
39 |
ttctcttagcagtcagaggtaaaccaatgaagttccatgatcttgttgtgtgtagcttacggta |
102 |
Q |
| |
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|||||||||| |||| |||||| ||||| || | |||||||||||||||||||||||| ||||| |
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| T |
34291425 |
ttctcttagctgtcaaaggtaatccaataaaatcccatgatcttgttgtgtgtagcttgcggta |
34291362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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