View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13285_low_9 (Length: 446)

Name: NF13285_low_9
Description: NF13285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13285_low_9
NF13285_low_9
[»] chr6 (33 HSPs)
chr6 (17-438)||(4556799-4557221)
chr6 (328-437)||(4570958-4571067)
chr6 (334-433)||(4585628-4585727)
chr6 (125-266)||(4607154-4607293)
chr6 (19-196)||(4585284-4585462)
chr6 (328-424)||(4606941-4607037)
chr6 (331-425)||(4560495-4560589)
chr6 (342-433)||(4480693-4480784)
chr6 (328-438)||(4579418-4579528)
chr6 (339-438)||(4574305-4574404)
chr6 (337-433)||(4598166-4598262)
chr6 (339-438)||(4563708-4563807)
chr6 (348-433)||(4504438-4504523)
chr6 (345-433)||(3171744-3171832)
chr6 (342-433)||(4516321-4516412)
chr6 (338-433)||(4592227-4592322)
chr6 (337-438)||(4613754-4613855)
chr6 (342-426)||(4492955-4493039)
chr6 (342-418)||(4505857-4505933)
chr6 (342-433)||(4617022-4617113)
chr6 (170-285)||(4570769-4570880)
chr6 (345-433)||(4267207-4267295)
chr6 (346-433)||(4392067-4392154)
chr6 (348-433)||(4490396-4490481)
chr6 (361-432)||(4568072-4568143)
chr6 (345-426)||(4299788-4299869)
chr6 (342-431)||(4461123-4461212)
chr6 (342-426)||(4515169-4515253)
chr6 (228-268)||(4585465-4585505)
chr6 (19-102)||(4570673-4570756)
chr6 (342-401)||(4601789-4601848)
chr6 (345-404)||(4622145-4622204)
chr6 (345-433)||(4625954-4626042)
[»] chr8 (3 HSPs)
chr8 (328-426)||(16686315-16686413)
chr8 (328-438)||(20863879-20863989)
chr8 (342-433)||(1674226-1674317)
[»] chr5 (2 HSPs)
chr5 (342-425)||(28000148-28000231)
chr5 (345-431)||(24103002-24103088)
[»] scaffold0288 (1 HSPs)
scaffold0288 (345-431)||(3762-3848)
[»] chr3 (1 HSPs)
chr3 (342-423)||(1281114-1281195)
[»] scaffold0477 (1 HSPs)
scaffold0477 (345-433)||(4727-4815)
[»] chr7 (1 HSPs)
chr7 (348-401)||(3086426-3086479)


Alignment Details
Target: chr6 (Bit Score: 332; Significance: 0; HSPs: 33)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 17 - 438
Target Start/End: Original strand, 4556799 - 4557221
Alignment:
Q  17 agtttaaacctgtacacaaagcaaaatgattgttatgccttaatttatccttcacatcagaatggaattcaagatactgtggaaaaaacctaactcaccc 116  Q
    ||||||||||||||||||  |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4556799 agtttaaacctgtacacacggcaaaatgattgttttgccttaatttatccttcacatgagaatggaattcaagatactgtggaaaaaacctaactcaccc 4556898  T
Q  117 aactgcaattattcaaagctataaaattcaactaataaagatttaaatacatgccatataattatctaattcaatccatttaatattagcatgcaataac 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    ||||||||    
T  4556899 aactgcaattattcaaagctataaaattcaactaataaagatttaaatacatgccatataactatctaattcaatccatttaatatta----gcaataac 4556994  T
Q  217 cactattttattttaagaattcttgcacaagatatgttcaattccatcatcagaaactgattacttattagcatcatcccttaaattcaat----tacta 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    |||||    
T  4556995 cactattttattttaagaattcttgcacaagatatgttcaattccatcatcataaactgattacttattagcatcatctcttaaattcaatgtaatacta 4557094  T
Q  313 aattgcat-nnnnnnngtcacttaggtttgattttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtg 411  Q
    ||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4557095 aattgcataaaaaaaagtcacttaggtttgattttgtttaagcaaaacctccttaatcactttttccaaattcatgtatgaacaaccaccaggtctcgtg 4557194  T
Q  412 tcctcctccgccttcgtcttcatctca 438  Q
    |||||||||||||||||||||||||||    
T  4557195 tcctcctccgccttcgtcttcatctca 4557221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 328 - 437
Target Start/End: Original strand, 4570958 - 4571067
Alignment:
Q  328 gtcacttaggtttgattttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcg 427  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  4570958 gtcacttaggtgtgattttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttct 4571057  T
Q  428 tcttcatctc 437  Q
    ||||||||||    
T  4571058 tcttcatctc 4571067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 334 - 433
Target Start/End: Original strand, 4585628 - 4585727
Alignment:
Q  334 taggtttgattttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttca 433  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  4585628 taggtttgattttatttaagcaaaacctccttaatcactttttccaagtttatgtatgaacaacctccaggtctcgtgtcctcctccgccttcttcttca 4585727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 125 - 266
Target Start/End: Complemental strand, 4607293 - 4607154
Alignment:
Q  125 ttattcaaagctataaaattcaactaataaagatttaaatacatgcca--tataattatctaattcaatccatttaatattagcatgcaataaccactat 222  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||  ||||||| || |||||||||||||||||||||    |||| |||||||||    
T  4607293 ttattcaaagctgtaaaattcaactaataaatatttaaatacatgccatatataattgtcgaattcaatccatttaatatta----gcaagaaccactat 4607198  T
Q  223 tttattttaagaattcttgcacaagatatgttcaattccatcat 266  Q
    |||| ||||||||||||||||||||||||||||| ||| |||||    
T  4607197 tttagtttaagaattcttgcacaagatatgttcacttctatcat 4607154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 4585284 - 4585462
Alignment:
Q  19 tttaaacctgtacacaaagcaaaatgattgttatgccttaatttatccttcacatcagaatggaattcaagatactgtggaaaaaacctaactcacccaa 118  Q
    |||||||||| ||||| |||||| |||||||| ||| ||||||||||||||| || | ||||||||||||||||||||||||||| ||| |||  |||||    
T  4585284 tttaaacctgaacacacagcaaagtgattgtt-tgctttaatttatccttcatatgataatggaattcaagatactgtggaaaaagcctcactaccccaa 4585382  T
Q  119 ctgcaattattcaaagctataaaattcaactaataaagatttaaatac--atgccatataattatctaattcaatccatt 196  Q
    || |||   ||||||||| ||||||||||| |||||| ||||||||||  |||||||| ||||||| |||||||||||||    
T  4585383 cttcaaaatttcaaagctgtaaaattcaacgaataaaaatttaaatacatatgccatagaattatccaattcaatccatt 4585462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 328 - 424
Target Start/End: Complemental strand, 4607037 - 4606941
Alignment:
Q  328 gtcacttaggtttgattttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgcct 424  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||| ||||| |||||||||    
T  4607037 gtcacttaggtttgattttgtttaagcaaaaccttcttaatcactttttccaagttcatgtatgaaaaaccacctggtctcttgtccccctccgcct 4606941  T

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Target: chr6; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 331 - 425
Target Start/End: Original strand, 4560495 - 4560589
Alignment:
Q  331 acttaggtttgattttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgcctt 425  Q
    ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| | ||||||||||    
T  4560495 acttatgtttgattttgtttaagcaacacctccttaatcactttctccaagttcatgtatgaacaacctccaggtctcgtgtacacctccgcctt 4560589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 342 - 433
Target Start/End: Original strand, 4480693 - 4480784
Alignment:
Q  342 attttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttca 433  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||| || ||||||    
T  4480693 attttgtttaagcaagacctccttaatcactttgtccaagttcatgtatgaacaaccaccaggtcttgtgtcctcctctgccatcttcttca 4480784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 328 - 438
Target Start/End: Original strand, 4579418 - 4579528
Alignment:
Q  328 gtcacttaggtttgattttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcg 427  Q
    |||||||| ||| |||||||||| || || ||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||| |||||     
T  4579418 gtcacttaagttcgattttgtttgagtaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttct 4579517  T
Q  428 tcttcatctca 438  Q
    |||||| ||||    
T  4579518 tcttcaactca 4579528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 339 - 438
Target Start/End: Original strand, 4574305 - 4574404
Alignment:
Q  339 ttgattttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttcatctca 438  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||  ||||||||||||| ||||||||||||||| ||||| ||||| |||||| ||||    
T  4574305 ttgattttgtttaagcaacacctccttaatcactttctccaagtttgtgtatgaacaacctccaggtctcgtgtccacctccaccttcttcttcagctca 4574404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 337 - 433
Target Start/End: Original strand, 4598166 - 4598262
Alignment:
Q  337 gtttgattttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttca 433  Q
    |||||||| |||||||| || ||||||||||||||||| || |||||||||||||||||||| ||| ||||||| ||||||||||||||| ||||||    
T  4598166 gtttgattctgtttaagaaacacctccttaatcactttctctaagttcatgtatgaacaacctccaagtctcgtttcctcctccgccttcatcttca 4598262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 339 - 438
Target Start/End: Original strand, 4563708 - 4563807
Alignment:
Q  339 ttgattttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttcatctca 438  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||| ||||||||  |||||| | ||| |||||| ||||    
T  4563708 ttgattttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttttcctccactttcttcttcaactca 4563807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 348 - 433
Target Start/End: Complemental strand, 4504523 - 4504438
Alignment:
Q  348 tttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttca 433  Q
    ||||||||| || |||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||| |||||| ||||||    
T  4504523 tttaagcaagacgtccttaatcactttgtccaagttcatgtatgaacaaccaccaagtcttgtgtcctcctctgccttcttcttca 4504438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 345 - 433
Target Start/End: Original strand, 3171744 - 3171832
Alignment:
Q  345 ttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttca 433  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||  ||| || |||||||| |||||| ||||||    
T  3171744 ttgtttaagcaagacctccttaatcactttatccaagttcatgtatgaacaaccaccaaatcttgtatcctcctctgccttcttcttca 3171832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 342 - 433
Target Start/End: Original strand, 4516321 - 4516412
Alignment:
Q  342 attttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttca 433  Q
    ||||||||| ||||  ||||||||||||||||||||||||||||  |||||||||||||| ||||| ||||||||||| |||||| ||||||    
T  4516321 attttgtttgagcagcacctccttaatcactttttccaagttcacatatgaacaaccacctggtcttgtgtcctcctctgccttcttcttca 4516412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 338 - 433
Target Start/End: Original strand, 4592227 - 4592322
Alignment:
Q  338 tttgattttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttca 433  Q
    ||||||||| ||||||||| |||||||| |||| ||| ||||||||||| ||||||||||| ||||||||||||| |||||| |||||| ||||||    
T  4592227 tttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgttctcctctgccttcttcttca 4592322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 337 - 438
Target Start/End: Complemental strand, 4613855 - 4613754
Alignment:
Q  337 gtttgattttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttcatct 436  Q
    |||||||||||||| ||||  ||||| || |||||||| ||||||||||| ||||||||||| || ||||||||||||||||| |||||| |||||| ||    
T  4613855 gtttgattttgtttcagcagcacctcattgatcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctctgccttcttcttcaact 4613756  T
Q  437 ca 438  Q
    ||    
T  4613755 ca 4613754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 342 - 426
Target Start/End: Original strand, 4492955 - 4493039
Alignment:
Q  342 attttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttc 426  Q
    ||||||||||||||| || ||||| |||||||| ||||||||||||||||||||||||||||||   ||||||||||| ||||||    
T  4492955 attttgtttaagcaagacatccttgatcactttgtccaagttcatgtatgaacaaccaccaggtactgtgtcctcctctgccttc 4493039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 342 - 418
Target Start/End: Original strand, 4505857 - 4505933
Alignment:
Q  342 attttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcct 418  Q
    ||||||||||||||| ||||||||||| ||||| |||||||||||| ||||||||||||||||||| || |||||||    
T  4505857 attttgtttaagcaacacctccttaataactttgtccaagttcatgaatgaacaaccaccaggtcttgtatcctcct 4505933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 342 - 433
Target Start/End: Original strand, 4617022 - 4617113
Alignment:
Q  342 attttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttca 433  Q
    ||||||||||||||| || |||||||| ||||| | |||||||||||||||||||||||| ||||| |||| |||||| |||||| ||||||    
T  4617022 attttgtttaagcaacacatccttaataactttgttcaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttca 4617113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 170 - 285
Target Start/End: Original strand, 4570769 - 4570880
Alignment:
Q  170 ccatataattatctaattcaatccatttaatattagcatgcaataaccactattttattttaagaattcttgcacaagatatgttcaattccatcatcag 269  Q
    ||||||||||||| |||||||| ||||||||||||||| |    || |||||||||| |||||||||||||||||||||||||||| || |  ||||||     
T  4570769 ccatataattatccaattcaatacatttaatattagcaag----aagcactattttagtttaagaattcttgcacaagatatgttcgatacagtcatcat 4570864  T
Q  270 aaactgattacttatt 285  Q
     |||| ||||||||||    
T  4570865 gaactcattacttatt 4570880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 345 - 433
Target Start/End: Complemental strand, 4267295 - 4267207
Alignment:
Q  345 ttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttca 433  Q
    |||||||||||  ||||||||||| ||||| |||||||||||||||||| ||||||||||||| |||| ||| || |||||| ||||||    
T  4267295 ttgtttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccaggtcttgtgttctcttctgccttcctcttca 4267207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 346 - 433
Target Start/End: Complemental strand, 4392154 - 4392067
Alignment:
Q  346 tgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttca 433  Q
    ||||||||||| ||||||||||||| ||| |||||||||||| ||||| ||||||||||||  ||||||||||  |||||| ||||||    
T  4392154 tgtttaagcaagacctccttaatcagtttgtccaagttcatgaatgaagaaccaccaggtcatgtgtcctcctttgccttcttcttca 4392067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 348 - 433
Target Start/End: Complemental strand, 4490481 - 4490396
Alignment:
Q  348 tttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttca 433  Q
    ||||||||  || |||||||||||||| ||||||||||||||||||| ||||||  |||||||||||||| | |||||| ||||||    
T  4490481 tttaagcatgacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgtcctccgctgccttcttcttca 4490396  T

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Target: chr6; HSP #25
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 361 - 432
Target Start/End: Original strand, 4568072 - 4568143
Alignment:
Q  361 tccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttc 432  Q
    |||||||||||||| |||||||||||||||||| || |||||||||| ||||||| ||| |||||| |||||    
T  4568072 tccttaatcactttgtccaagttcatgtatgaagaatcaccaggtcttgtgtccttctctgccttcttcttc 4568143  T

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Target: chr6; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 345 - 426
Target Start/End: Complemental strand, 4299869 - 4299788
Alignment:
Q  345 ttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttc 426  Q
    ||||||||||| |||||||||||| ||||| |||||||||||||| ||||||||||| ||  | |||| |||||| ||||||    
T  4299869 ttgtttaagcagaacctccttaataactttgtccaagttcatgtacgaacaaccacctggattagtgttctcctctgccttc 4299788  T

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Target: chr6; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 342 - 431
Target Start/End: Original strand, 4461123 - 4461212
Alignment:
Q  342 attttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtctt 431  Q
    ||||||||||||||| || |||||||| ||||| ||||||||| ||||||||  ||| |||||||| || ||||||||| ||||| ||||    
T  4461123 attttgtttaagcaagacatccttaatgactttgtccaagttcttgtatgaaacacctccaggtctggtatcctcctccaccttcttctt 4461212  T

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Target: chr6; HSP #28
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 342 - 426
Target Start/End: Complemental strand, 4515253 - 4515169
Alignment:
Q  342 attttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttc 426  Q
    ||||||||||||||| |||||||| |||||||| |||||||||| ||||||| | || ||| |||| |||||||| || ||||||    
T  4515253 attttgtttaagcaacacctccttgatcactttgtccaagttcaagtatgaagacccgccaagtctagtgtcctcgtctgccttc 4515169  T

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Target: chr6; HSP #29
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 228 - 268
Target Start/End: Original strand, 4585465 - 4585505
Alignment:
Q  228 tttaagaattcttgcacaagatatgttcaattccatcatca 268  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  4585465 tttaagaattcttgcacaagatatgttcaattccatcatca 4585505  T

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Target: chr6; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 4570673 - 4570756
Alignment:
Q  19 tttaaacctgtacacaaagcaaaatgattgttatgccttaatttatccttcacatcagaatggaattcaagatactgtggaaaa 102  Q
    |||||||||||||||| || |||||||||| | ||||||||||||||||  |||| | |||||||||||| ||| |||| ||||    
T  4570673 tttaaacctgtacacacagaaaaatgattggtttgccttaatttatcctatacatgataatggaattcaacatagtgtgcaaaa 4570756  T

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Target: chr6; HSP #31
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 342 - 401
Target Start/End: Original strand, 4601789 - 4601848
Alignment:
Q  342 attttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccacc 401  Q
    ||||||||||||||| ||||||||||| ||||| |||| |||| ||||||||||||||||    
T  4601789 attttgtttaagcaacacctccttaataactttgtccaggttcttgtatgaacaaccacc 4601848  T

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Target: chr6; HSP #32
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 345 - 404
Target Start/End: Original strand, 4622145 - 4622204
Alignment:
Q  345 ttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccagg 404  Q
    |||||||||||  ||||||||||| ||||| ||||||||  |||||||||||||||||||    
T  4622145 ttgtttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagg 4622204  T

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Target: chr6; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 433
Target Start/End: Original strand, 4625954 - 4626042
Alignment:
Q  345 ttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttca 433  Q
    |||||||||||| || || ||||||| ||| ||||  |||||||||||||||||||| || ||  ||| |||||| |||||| ||||||    
T  4625954 ttgtttaagcaagacatcattaatcagtttatccatattcatgtatgaacaaccaccgggactaatgttctcctctgccttcttcttca 4626042  T

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Target: chr8 (Bit Score: 79; Significance: 9e-37; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 328 - 426
Target Start/End: Complemental strand, 16686413 - 16686315
Alignment:
Q  328 gtcacttaggtttgattttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttc 426  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| || ||| |||||    
T  16686413 gtcacttaggtttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtctcgggtcttcgtccaccttc 16686315  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 328 - 438
Target Start/End: Complemental strand, 20863989 - 20863879
Alignment:
Q  328 gtcacttaggtttgattttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcg 427  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| |||  | ||||| ||||||||||| ||||||     
T  20863989 gtcacttaagtttgattttgtttaagcaacacctccttaatcactttgtccaagttcatatatgaaccaccttccggtcttgtgtcctcctctgccttct 20863890  T
Q  428 tcttcatctca 438  Q
    |||||| ||||    
T  20863889 tcttcaactca 20863879  T

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Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 342 - 433
Target Start/End: Original strand, 1674226 - 1674317
Alignment:
Q  342 attttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttca 433  Q
    ||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||| ||||| |||| |||||| |||||| ||||||    
T  1674226 attttgtttaagcaacacttccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttca 1674317  T

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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 342 - 425
Target Start/End: Complemental strand, 28000231 - 28000148
Alignment:
Q  342 attttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgcctt 425  Q
    ||||||||||| ||| || |||||||||||||| |||||||||||||||||||||||||| ||||| |||| |||||| |||||    
T  28000231 attttgtttaaacaacacttccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgcctt 28000148  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 345 - 431
Target Start/End: Original strand, 24103002 - 24103088
Alignment:
Q  345 ttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtctt 431  Q
    |||||||||||  ||||||||||| ||||| |||||||||||||||||| ||||||||| ||| |||| ||| || |||||| ||||    
T  24103002 ttgtttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccagatcttgtgttctcttctgccttcttctt 24103088  T

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Target: scaffold0288 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 345 - 431
Target Start/End: Complemental strand, 3848 - 3762
Alignment:
Q  345 ttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtctt 431  Q
    |||||||||||||||||||||||| ||||| |||| |||||||||||||| |||||| ||||| |||| |||||| |||||| ||||    
T  3848 ttgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttcttctt 3762  T

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Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 342 - 423
Target Start/End: Original strand, 1281114 - 1281195
Alignment:
Q  342 attttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgcc 423  Q
    ||||||||||||||| |  |||||||||||||| || ||||||||||||||||||||||| ||||| |||| ||||||||||    
T  1281114 attttgtttaagcaacatttccttaatcactttgtcgaagttcatgtatgaacaaccacccggtctagtgttctcctccgcc 1281195  T

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Target: scaffold0477 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 345 - 433
Target Start/End: Complemental strand, 4815 - 4727
Alignment:
Q  345 ttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttca 433  Q
    |||||||||||  ||||||||||||||||| |||||||||||||||||||| |||||||  || |||| |||||| |||||| ||||||    
T  4815 ttgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccaccagaactggtgttctcctctgccttcttcttca 4727  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 401
Target Start/End: Original strand, 3086426 - 3086479
Alignment:
Q  348 tttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccacc 401  Q
    ||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||    
T  3086426 tttaagcaagacctccttaataactttgtccaagttcatgtatgaacaaccacc 3086479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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