View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13286_high_3 (Length: 429)
Name: NF13286_high_3
Description: NF13286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13286_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 24 - 415
Target Start/End: Original strand, 40905343 - 40905741
Alignment:
| Q |
24 |
tacatcgaatcgtgcactgttacggaagattaattaatattgcagaatgatatgttatttgtgttgctaatatgatattactatgatattacaggaactg |
123 |
Q |
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| T |
40905343 |
tacatcgaatcgtgcactgttacggaagattaattaatattgcagaatgatatgttatttgtgttgctaatatgatattactatgatattacaggaactg |
40905442 |
T |
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| Q |
124 |
gaactggagaaattcattactcacacaattccattttcagagattaacaaagcttttgattacatgctgaaaggggagtccatcagatgtatcatacgaa |
223 |
Q |
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| T |
40905443 |
gaactagagaaattcattactcacacaattccattttcagagattaacaaagcttttgattacatgctgaaaggggagtccatcagatgtatcatacgaa |
40905542 |
T |
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| Q |
224 |
tggaggagtaaaa---taaaacactgttgaaatattcgatactagtgtggactgagttatctttctag----ttgtttatataaataaatttcataaata |
316 |
Q |
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| T |
40905543 |
tgggggagtaaaactctagaacactgttgaaatatgccatactagtgtggactgagttatctttctagttttttatttatataaataattttcataaata |
40905642 |
T |
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| Q |
317 |
atccctttgggattattgagtttctgagaatttgtgaagtttgcatgtaaagaattatgctgttgggattgtttaataaaagataagatagattttgat |
415 |
Q |
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| T |
40905643 |
atcccttttggattattgagtttgtgagaatttgtgaaatttgcatgtaaagaattatgctactgggattgtctaataaaagataagctagattttgat |
40905741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 115 - 415
Target Start/End: Original strand, 40900884 - 40901183
Alignment:
| Q |
115 |
caggaactggaactggagaaattcattactcacacaattccattttcagagattaacaaagcttttgattacatgctgaaaggggagtccatcagatgta |
214 |
Q |
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| T |
40900884 |
caggagctggaacttgagaaattcatcactcactcaatcccattttcagagattaacaaagcttttgattacatgctgaaaggagagtccatcagatgca |
40900983 |
T |
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| Q |
215 |
tcatacgaatggaggagtaaaa---taaaacactgttgaaatattcgatactagtgtggactgagttatctttctagttgtttatataaataaatttcat |
311 |
Q |
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| T |
40900984 |
tcatccgaatggaggagtaaaactctaaaacaatgatgtaataatccctacta--agggactcatttctctccttggttgttgaga-aaaaaaatttcat |
40901080 |
T |
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| Q |
312 |
aaataatccctttgggattattgagtttctgagaatttgtgaagtttgcatgtaaagaattatgctgttgggattgtttaataaaagataagatagattt |
411 |
Q |
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| T |
40901081 |
aaataat-tcttttggattatgaagtttgtgagaatttgtgaagtttacatgtaaagaattgtgctgttgggattctctaatacaagataagctagattt |
40901179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 115 - 236
Target Start/End: Original strand, 40882184 - 40882305
Alignment:
| Q |
115 |
caggaactggaactggagaaattcattactcacacaattccattttcagagattaacaaagcttttgattacatgctgaaaggggagtccatcagatgta |
214 |
Q |
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| T |
40882184 |
caggagctggaacttgagaaattcatcactcacacaattccattttcagagattaacaaagcttttgattacatgttgaaaggagagtccatcagatgta |
40882283 |
T |
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| Q |
215 |
tcatacgaatggaggagtaaaa |
236 |
Q |
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| T |
40882284 |
tcatccgaatggaggagtaaaa |
40882305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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