View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13286_low_6 (Length: 244)
Name: NF13286_low_6
Description: NF13286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13286_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 14 - 226
Target Start/End: Original strand, 9329925 - 9330137
Alignment:
| Q |
14 |
tactaaaacaatggtggatgaagaatgcagaaaagatatgttcattaaatgatattttatgcaggttctttgttatgttttggtgtcatgataaatgaaa |
113 |
Q |
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| T |
9329925 |
tactaaaacaatggtggatgaagaatgcagaaaagatatgttcattaaatgatattttatgcaggttctttgttatgttttggtgtcatgataaatgaaa |
9330024 |
T |
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| Q |
114 |
agtaaaggaaattcaatcagcaaaaccatcaaaatgtaaaagctagctaatattctggtcatacttttatatatgagcatggtaggtgaccaaactacca |
213 |
Q |
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| T |
9330025 |
agtaaaggaaattcaatcagcaaaaccatcaaaatgtaaaagctagctaatattctggtcatacttttatatatgagcatggtaggtgaccaaactacca |
9330124 |
T |
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| Q |
214 |
agaatctagtatg |
226 |
Q |
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| T |
9330125 |
agaatctagtatg |
9330137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 130
Target Start/End: Original strand, 9357556 - 9357671
Alignment:
| Q |
15 |
actaaaacaatggtggatgaagaatgcagaaaagatatg-ttcattaaatgatattttatgcaggttctttgttatgttttggtgtcatgataaatgaaa |
113 |
Q |
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| T |
9357556 |
actaaaaccgtgttggacgaagaatgcagaaaagatatgtttcatt-aatgatatttcatcttggttcttttttatgttttggaaccatgataaatgaaa |
9357654 |
T |
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| Q |
114 |
agtaaaggaaattcaat |
130 |
Q |
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| T |
9357655 |
ggtaaaggaaattcaat |
9357671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 9350150 - 9350207
Alignment:
| Q |
15 |
actaaaacaatggtggatgaagaatgcagaaaagatatgttcattaaatgatatttta |
72 |
Q |
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| T |
9350150 |
actaaaactatgttggatgaagaatgcagaaaaaatatgtccattaaatgatatttta |
9350207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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