View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13286_low_7 (Length: 238)

Name: NF13286_low_7
Description: NF13286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13286_low_7
NF13286_low_7
[»] chr4 (10 HSPs)
chr4 (10-234)||(6948174-6948398)
chr4 (22-93)||(11160646-11160717)
chr4 (22-84)||(11931996-11932058)
chr4 (26-93)||(11166276-11166343)
chr4 (27-91)||(11179291-11179355)
chr4 (45-91)||(11174669-11174715)
chr4 (45-91)||(11182131-11182177)
chr4 (166-231)||(11190104-11190169)
chr4 (27-91)||(11189953-11190017)
chr4 (32-90)||(52791991-52792049)
[»] chr7 (1 HSPs)
chr7 (11-234)||(662185-662408)
[»] chr8 (4 HSPs)
chr8 (24-84)||(24817214-24817274)
chr8 (161-215)||(24817071-24817125)
chr8 (41-90)||(24406504-24406553)
chr8 (41-90)||(24412655-24412704)
[»] chr5 (4 HSPs)
chr5 (39-84)||(8981943-8981988)
chr5 (39-90)||(8991442-8991493)
chr5 (166-215)||(36687067-36687116)
chr5 (24-84)||(35390529-35390589)


Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 10 - 234
Target Start/End: Original strand, 6948174 - 6948398
Alignment:
Q  10 catcatcaaagagcttttcatcggaactggcagcctcaacatgcttcttgcaatactcaataaccttagccaagaacttgccgggtatgtgcggaaccag 109  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6948174 catcatcaaagagcttttcatcagaactggcagcctcaacatgcttcttgcaatactcaataaccttagccaagaacttgccgggtatgtgcggaaccag 6948273  T
Q  110 gatttcagtgacgttggcagcatcatccgtcaaattcttgattgattggaacacaacctcttcgatttcaaaggtctcaccgtcggaactcttcatggtg 209  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6948274 gatttcagtgtcgttggcagcaccatccgtcaaattcttgattgattggaacacaacctcttcgatttcaaatgtctcaccgtcggaactcttcatggtg 6948373  T
Q  210 aacttctttatcgatgatgatgatg 234  Q
    ||||||||| |||||||||||||||    
T  6948374 aacttctttgtcgatgatgatgatg 6948398  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 93
Target Start/End: Complemental strand, 11160717 - 11160646
Alignment:
Q  22 gcttttcatcggaactggcagcctcaacatgcttcttgcaatactcaataaccttagccaagaacttgccgg 93  Q
    |||||||||| ||||||| ||| ||||||||||||||||||| |||||||||| ||||||||| ||||||||    
T  11160717 gcttttcatcagaactggtagcgtcaacatgcttcttgcaatgctcaataaccatagccaagatcttgccgg 11160646  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 11931996 - 11932058
Alignment:
Q  22 gcttttcatcggaactggcagcctcaacatgcttcttgcaatactcaataaccttagccaaga 84  Q
    ||||| ||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||    
T  11931996 gctttccatcggaactctcagcctcaacatgcttcttgcaatactcaataaccttcgccaaga 11932058  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 11166276 - 11166343
Alignment:
Q  26 ttcatcggaactggcagcctcaacatgcttcttgcaatactcaataaccttagccaagaacttgccgg 93  Q
    |||||| ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||||||||    
T  11166276 ttcatcagaacttgcagcatcaacatgtttcttgcaatactcaataaccatagccaagatcttgccgg 11166343  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 11179291 - 11179355
Alignment:
Q  27 tcatcggaactggcagcctcaacatgcttcttgcaatactcaataaccttagccaagaacttgcc 91  Q
    ||||| ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||||||    
T  11179291 tcatcagaacttgcagcatcaacatgtttcttgcaatactcaataaccatagccaagatcttgcc 11179355  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 91
Target Start/End: Complemental strand, 11174715 - 11174669
Alignment:
Q  45 tcaacatgcttcttgcaatactcaataaccttagccaagaacttgcc 91  Q
    |||||||| |||||||||||||| |||||||||||||||| ||||||    
T  11174715 tcaacatgtttcttgcaatactcgataaccttagccaagatcttgcc 11174669  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 91
Target Start/End: Complemental strand, 11182177 - 11182131
Alignment:
Q  45 tcaacatgcttcttgcaatactcaataaccttagccaagaacttgcc 91  Q
    |||||||| |||||||||||||| |||||||||||||||| ||||||    
T  11182177 tcaacatgtttcttgcaatactcgataaccttagccaagatcttgcc 11182131  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 11190104 - 11190169
Alignment:
Q  166 cctcttcgatttcaaaggtctcaccgtcggaactcttcatggtgaacttctttatcgatgatgatg 231  Q
    |||||||||||||||||||||| || || |||||||||| | ||| |||||| || ||||||||||    
T  11190104 cctcttcgatttcaaaggtctcgccttcagaactcttcaggatgatcttcttcattgatgatgatg 11190169  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 11189953 - 11190017
Alignment:
Q  27 tcatcggaactggcagcctcaacatgcttcttgcaatactcaataaccttagccaagaacttgcc 91  Q
    ||||| |||||  |||| |||||||| ||||||||||||||||||||| | ||||||| ||||||    
T  11189953 tcatcagaacttacagcatcaacatgtttcttgcaatactcaataaccatggccaagatcttgcc 11190017  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 52791991 - 52792049
Alignment:
Q  32 ggaactggcagcctcaacatgcttcttgcaatactcaataaccttagccaagaacttgc 90  Q
    |||||||| ||| ||||| |||||||| ||||||||||||||||| | ||||| |||||    
T  52791991 ggaactggtagcttcaacgtgcttcttacaatactcaataaccttcgtcaagatcttgc 52792049  T

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Target: chr7 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 662185 - 662408
Alignment:
Q  11 atcatcaaagagcttttcatcggaactggcagcctcaacatgcttcttgcaatactcaataaccttagccaagaacttgccgggtatgtgcggaaccagg 110  Q
    ||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||| | |||| |||||||||||    
T  662185 atcatcaaagagcttttcataagaactggcagcctcaacatgtttcttgcaatactcaataaccttagccaatatcttgcccgttatgcgcggaaccagg 662284  T
Q  111 atttcagtgacgttggcagcatcatccgtcaaattcttgattgattggaacacaacctcttcgatttcaaaggtctcaccgtcggaactcttcatggtga 210  Q
    |||||| || ||| |||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| | | |||||||||||||| |||||    
T  662285 atttcaatgtcgtcggcaacatcatcggtcaaattcttgattgattggaacaccacctcttcgatttcaaaggtcacgctgtcggaactcttcaaggtga 662384  T
Q  211 acttctttatcgatgatgatgatg 234  Q
     ||||||  | |||||||||||||    
T  662385 tcttcttcgtggatgatgatgatg 662408  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 24817274 - 24817214
Alignment:
Q  24 ttttcatcggaactggcagcctcaacatgcttcttgcaatactcaataaccttagccaaga 84  Q
    ||||| |||||||| | ||||||||||||||||||||||||||||||||| || |||||||    
T  24817274 ttttcttcggaacttgtagcctcaacatgcttcttgcaatactcaataactttcgccaaga 24817214  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 24817125 - 24817071
Alignment:
Q  161 cacaacctcttcgatttcaaaggtctcaccgtcggaactcttcatggtgaacttc 215  Q
    ||||||||| ||||||||||||||||| ||||||||||| |||| ||||| ||||    
T  24817125 cacaacctcgtcgatttcaaaggtctcgccgtcggaacttttcaaggtgatcttc 24817071  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 24406504 - 24406553
Alignment:
Q  41 agcctcaacatgcttcttgcaatactcaataaccttagccaagaacttgc 90  Q
    |||||||||||||||||| |||||||| |||||||| ||||||| |||||    
T  24406504 agcctcaacatgcttcttacaatactcgataacctttgccaagatcttgc 24406553  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 90
Target Start/End: Complemental strand, 24412704 - 24412655
Alignment:
Q  41 agcctcaacatgcttcttgcaatactcaataaccttagccaagaacttgc 90  Q
    |||||||||||||||||| |||||||| |||||||| | ||||| |||||    
T  24412704 agcctcaacatgcttcttacaatactcgataacctttgtcaagatcttgc 24412655  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 8981988 - 8981943
Alignment:
Q  39 gcagcctcaacatgcttcttgcaatactcaataaccttagccaaga 84  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||    
T  8981988 gcagcctcaacatgcttcttgcaatactcaatcaccttcgccaaga 8981943  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 8991493 - 8991442
Alignment:
Q  39 gcagcctcaacatgcttcttgcaatactcaataaccttagccaagaacttgc 90  Q
    ||||| |||||||||||||||||||||||||| ||||| ||||||| |||||    
T  8991493 gcagcgtcaacatgcttcttgcaatactcaatcaccttcgccaagatcttgc 8991442  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 36687067 - 36687116
Alignment:
Q  166 cctcttcgatttcaaaggtctcaccgtcggaactcttcatggtgaacttc 215  Q
    |||| ||||||||||||||||| |||||||||||||||| ||||| ||||    
T  36687067 cctcgtcgatttcaaaggtctccccgtcggaactcttcagggtgatcttc 36687116  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 35390529 - 35390589
Alignment:
Q  24 ttttcatcggaactggcagcctcaacatgcttcttgcaatactcaataaccttagccaaga 84  Q
    ||||| ||||||||  | |||||||||||||| || ||||||||||||||||| |||||||    
T  35390529 ttttcttcggaactcccggcctcaacatgctttttacaatactcaataaccttcgccaaga 35390589  T

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