View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13286_low_8 (Length: 203)
Name: NF13286_low_8
Description: NF13286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13286_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 38 - 188
Target Start/End: Original strand, 6947889 - 6948039
Alignment:
| Q |
38 |
tcttaaccatataaagttttagagactaaaccctagactctaatcagttttcaaaagtgcattgattttcacgacgaacttcctcatcttcctcgggacg |
137 |
Q |
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| T |
6947889 |
tcttaaccatataaagttttagagactaaaccctagactctaatcagttttcaaaagtgcattgattttcacaacgaacttcctcatcttccttgggacg |
6947988 |
T |
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| Q |
138 |
gtaagcattcacaatgttgaaaatcttactaatctcctccggcttcttatc |
188 |
Q |
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| T |
6947989 |
gtaagcattcacaatgttgaaaatcttactaatctcctccggcttcttatc |
6948039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 180
Target Start/End: Complemental strand, 11160986 - 11160872
Alignment:
| Q |
66 |
aaccctagactctaatcagttttcaaaagtgcattgattttcacgacgaacttcctcatcttcctcgggacggtaagcattcacaatgttgaaaatctta |
165 |
Q |
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| T |
11160986 |
aaccctagactctaatcattcgtcaaaagcccattgagtttcgctacggacttcctcctcttcctccggagtgtaatcattaataatgttgaaagtctta |
11160887 |
T |
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| Q |
166 |
ctaatctcctccggc |
180 |
Q |
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| T |
11160886 |
cgaatctcctccggc |
11160872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 57 - 88
Target Start/End: Original strand, 6950380 - 6950411
Alignment:
| Q |
57 |
tagagactaaaccctagactctaatcagtttt |
88 |
Q |
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| T |
6950380 |
tagagactaaaccctagactctaatcagtttt |
6950411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 176
Target Start/End: Original strand, 11179071 - 11179145
Alignment:
| Q |
102 |
attttcacgacgaacttcctcatcttcctcgggacggtaagcattcacaatgttgaaaatcttactaatctcctc |
176 |
Q |
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|||||| |||||||||||||| |||||||| || |||| ||||| ||||||||||||||| | ||||||||| |
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| T |
11179071 |
attttcgcgacgaacttcctcctcttcctctggggtgtaatcattcttaatgttgaaaatcttgcgaatctcctc |
11179145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 38 - 188
Target Start/End: Original strand, 661917 - 662067
Alignment:
| Q |
38 |
tcttaaccatataaagttttagagactaaaccctagactctaatcagttttcaaaagtgcattgattttcacgacgaacttcctcatcttcctcgggacg |
137 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| || |||| ||| ||||| |
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| T |
661917 |
tcttaaccatataaaattttagagactaaaccctagactctaattagttttcaaaagtgcattgattttcacgacaaacttcatcctcttactccggacg |
662016 |
T |
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| Q |
138 |
gtaagcattcacaatgttgaaaatcttactaatctcctccggcttcttatc |
188 |
Q |
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||||||||| | ||||||||||||||||| ||| ||||||||||||||||| |
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| T |
662017 |
gtaagcatttataatgttgaaaatcttaccaatatcctccggcttcttatc |
662067 |
T |
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