View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13287_high_1 (Length: 583)
Name: NF13287_high_1
Description: NF13287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13287_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 47950363 - 47950096
Alignment:
| Q |
18 |
cagagaacgaaattggaccggttgaagacctaataaacgagacatatccaaggttgtacagaaacgtaaaaaattattgtgaaatgaacaacaagaccta |
117 |
Q |
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| T |
47950363 |
cagagaacgaaattggaccggttgaagacctaataaacgagacatatccaaggttgtacagaaacgtaaaaaattattgtgaaatgaactacaagaccta |
47950264 |
T |
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| Q |
118 |
tcaagaggggaaaatatatagcacttgatactgtcaaaattgcag---ataactatgatcagaagtgagacaaatatcatgtttggatttctaatgactt |
214 |
Q |
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| T |
47950263 |
tcaagaggggaaaatatatagcacttgatactgtcaaaattgcagataataactacgatcagaagtgagacaaatatcatgtttggatttctaatgactt |
47950164 |
T |
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| Q |
215 |
gttgttagaggaatacatattaatgttttggttatt-----aagtcaaactatggaaacagagatatt |
277 |
Q |
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| T |
47950163 |
gttgttagaggaatacatattaatgttttggttattaagtcaagtcaaactatggaaacagagatatt |
47950096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 428 - 568
Target Start/End: Complemental strand, 47949971 - 47949831
Alignment:
| Q |
428 |
tcaacagttcagatttaatttttaaataacgactaaaattacgctggggtgacagacttggatcctctaatactcacacaataagacataagcctataca |
527 |
Q |
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| T |
47949971 |
tcaacagctcagatttaatttttaaaaaacgactaaaattacgctggggtgacagacttggatcctctaatactcacacaataagacataagcctataca |
47949872 |
T |
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| Q |
528 |
taatataccttaaaatgataactattagtggttgtcatagt |
568 |
Q |
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| T |
47949871 |
taatataccttaaaatgataactattagtggttgtcatagt |
47949831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 272 - 362
Target Start/End: Complemental strand, 47950058 - 47949968
Alignment:
| Q |
272 |
gatatttatgtgtgtattacacttatgaataatggcaggcttacctttgttgtaagttttttgccctaagtttgggtcaggatcatctcaa |
362 |
Q |
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| T |
47950058 |
gatatttatgtgtgtattacacttatgaataatggcaggcttacctttgttgtaagttttttgccctaagtttgggtcaggatcctctcaa |
47949968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 169
Target Start/End: Complemental strand, 47957712 - 47957569
Alignment:
| Q |
22 |
gaacgaaattggaccggttgaagacctaataaacgagacatatccaaggttgtacagaaacgtaaaaaattattgtgaaatgaacaacaagacctatcaa |
121 |
Q |
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| T |
47957712 |
gaacgaaattggacctgttgaaggactggtaaatgagaaacgtccaagggtgtataaaaatgtcaaaaattatggtgatattaactataggtgctatcaa |
47957613 |
T |
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| Q |
122 |
gaggggaaaatatatagcacttgatactgtcaaaattgcagataacta |
169 |
Q |
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| T |
47957612 |
gaggggaaaatt----gcacttgatactgtcaaaatgacagataacta |
47957569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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