View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13287_high_11 (Length: 311)
Name: NF13287_high_11
Description: NF13287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13287_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 38850851 - 38851145
Alignment:
| Q |
1 |
caaacaaatataagtctcagtagtgttagattcccacaaatcaaaagataaagatatcctattaggaatggtagttaattgttgtttaagcttaggtttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38850851 |
caaacaaatataagtctcagtagtgttagattcccacaaatcaaaagataaagatatcctattaggaatggtagttaattgttgtttaagcttaggtttc |
38850950 |
T |
|
| Q |
101 |
tctttcgtgtacaaatgtgaaacgtaagcttcgataacatttctaggaggtatagcaatatttggatttaagaactcagagtacttcctcattccctcga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38850951 |
tctttcgtgtacaaatgtgaaacgtaagcttcgataacatttctaggaggtataggaatatttggatttaagaactcggagtacttcctcattccctcga |
38851050 |
T |
|
| Q |
201 |
gctcgaaaaaatgaaagggcaaatcatgtgcaaggatcgtagaagcacatatttccacaaagcgtgaatccatttgatctacttcgttatcaaat |
295 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38851051 |
gctcgaaaaaatgaaagggcaaatcatgtgcaaggatcgtagaagcacatatttccacaaagcgtgaatccatttgatctacttcgttatcaaat |
38851145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 38316494 - 38316200
Alignment:
| Q |
1 |
caaacaaatataagtctcagtagtgttagattcccacaaatcaaaagataaagatatcctattaggaatggtagttaattgttgtttaagcttaggtttc |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||| |||||||||||| ||||| |
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| T |
38316494 |
caaacaaatataagtctcagtggtgttagattcccacaaatcaaaagttaaagatatcctattaggaatgctagccaattcttgtttaagctttagtttc |
38316395 |
T |
|
| Q |
101 |
tctttcgtgtacaaatgtgaaacgtaagcttcgataacatttctaggaggtatagcaatatttggatttaagaactcagagtacttcctcattccctcga |
200 |
Q |
| |
|
||||||||||||||||| ||||| ||||| || ||||||||| | ||||||||| || |||||||||||||||||||| ||||||||||||| |||||| |
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|
| T |
38316394 |
tctttcgtgtacaaatgcgaaacataagcctcaataacatttgtcggaggtataacagcatttggatttaagaactcagtgtacttcctcattacctcga |
38316295 |
T |
|
| Q |
201 |
gctcgaaaaaatgaaagggcaaatcatgtgcaaggatcgtagaagcacatatttccacaaagcgtgaatccatttgatctacttcgttatcaaat |
295 |
Q |
| |
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|||| ||||||| ||||||||||||||||||||||||| ||||||| ||||| || |||| |||| ||| |||| ||||| |||||||||||| |
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| T |
38316294 |
gctccaaaaaattaaagggcaaatcatgtgcaaggatcatagaagcgcatatacccgcaaattgtgattccctttgttctacctcgttatcaaat |
38316200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 38325321 - 38325090
Alignment:
| Q |
19 |
agtagtgttagattcccacaaatcaaaagataaagatatcctattaggaatggtagttaattgttgtttaagcttaggtttctctttcgtgtacaaatgt |
118 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||| |
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|
| T |
38325321 |
agtagtgcaagattcccacaaatcaaaagttaaagataccctattaggaatggtagccaattgttgtttaagcttagatttctctttcatgtacaaatga |
38325222 |
T |
|
| Q |
119 |
gaaacgtaagcttcgataacatttctaggaggtatagcaatatttggatttaagaactcagagtacttcctcattccctcgagctcgaaaaaatgaaagg |
218 |
Q |
| |
|
| || ||||| || ||||||||| ||||||||||| || |||| ||||||| ||||| |||| |||||||||||||| |||| ||||||| ||||| |
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| T |
38325221 |
gtgacataagcctcaataacatttgtaggaggtataacagcatttcgatttaaagtctcagtgtacctcctcattccctcgtgctccaaaaaatcaaagg |
38325122 |
T |
|
| Q |
219 |
gcaaatcatgtgcaaggatcgtagaagcacat |
250 |
Q |
| |
|
| |||||| ||||||||||| ||||||||||| |
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|
| T |
38325121 |
gtaaatcaagtgcaaggatcatagaagcacat |
38325090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 38305766 - 38305515
Alignment:
| Q |
1 |
caaacaaatataagtctcagtagtgttagattcccacaaatcaaaagataaagatatcctattaggaatggtagttaattgttgtttaagcttaggtttc |
100 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||| ||||| |
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|
| T |
38305766 |
caaacagatataagtctcagcagtgttagattcccacaaatcaaaagttaaagatatcctattaggaatggtagccaattcttgtttaagcttcagtttc |
38305667 |
T |
|
| Q |
101 |
tctttcgtgtacaaatgtgaaacgtaagcttcgataacatttctaggaggtatagcaatatttggatttaagaactcagagtacttcctcattccctcga |
200 |
Q |
| |
|
|||||| |||| |||| || || ||||| || ||||||| | |||||| | | |||||||||||||||||| || | | |||||||| |||||| |
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|
| T |
38305666 |
tctttcatgtataaatcagagacataagcctcaataacatctacaggaggcaaaacaatatttggatttaagaccttcatgaagttcctcatcccctcgc |
38305567 |
T |
|
| Q |
201 |
gctcgaaaaaatgaaagggcaaatcatgtgcaaggatcgtagaagcacatat |
252 |
Q |
| |
|
|||| ||||| | |||||| ||||||| || ||||||| ||||||||||||| |
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|
| T |
38305566 |
gctcaaaaaactcaaagggaaaatcatttgaaaggatcatagaagcacatat |
38305515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 38320592 - 38320344
Alignment:
| Q |
1 |
caaacaaatataagtctcagtagtgttagattcccacaaatcaaaagataaagatatcctattaggaatggtagttaattgttgtttaagcttaggtttc |
100 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||| ||||| || |||||||||||||||||||||||||| || | ||||||||||| ||||| |
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|
| T |
38320592 |
caaacaaatataagtctcggtagtgcatgattcccacagatcaacagttaaagatatcctattaggaatggtagccaaatcctgtttaagcttgagtttc |
38320493 |
T |
|
| Q |
101 |
tctttcgtgtacaaatgtgaaacgtaagcttcgataacatttctaggaggtatagcaatatttggatttaagaactcagagtacttcctcattccctcga |
200 |
Q |
| |
|
||||||||||||||| || || ||||| | ||||||||| ||||||| ||| || |||||||||||||| || | | || ||||| |||||| |
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| T |
38320492 |
gctttcgtgtacaaatccgagacataagccttaataacatttataggaggcataacagcatttggatttaagaccttcatgaagttactcataccctcgc |
38320393 |
T |
|
| Q |
201 |
gctcgaaaaaatgaaagggcaaatcatgtgcaaggatcgtagaagcaca |
249 |
Q |
| |
|
|||| ||||||| |||||| ||||||| || ||||||| |||||||||| |
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|
| T |
38320392 |
gctcaaaaaaatcaaagggaaaatcatttgaaaggatcatagaagcaca |
38320344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 38313085 - 38312910
Alignment:
| Q |
1 |
caaacaaatataagtctcagtagtgttagattcccacaaatcaaaagataaagatatcc----tattaggaatggtagttaattgttgtttaagcttagg |
96 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||| |||| ||| |||||||| | |
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|
| T |
38313085 |
caaacaaatataagtctcagtagtattagattcccacaaatcaaaagttaaagatatcctatttattaggaatggtagccaattcttgcttaagcttgag |
38312986 |
T |
|
| Q |
97 |
tttctctttcgtgtacaaatgtgaaacgtaagcttcgataacatttctaggaggtatagcaatatttggatttaag |
172 |
Q |
| |
|
||||| ||||||||||||| || || ||||| || | ||||||| |||||| ||| ||| ||||||||||||| |
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|
| T |
38312985 |
tttctgattcgtgtacaaatcggagacataagcctcaagaacatttgaaggaggcataacaacatttggatttaag |
38312910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 38299847 - 38299732
Alignment:
| Q |
1 |
caaacaaatataagtctcagtagtgttagattcccacaaatcaaaagataaagatatcctattaggaatggtagttaattgttgtttaagcttaggtttc |
100 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||| |||| | |||||||||| || ||||| |
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|
| T |
38299847 |
caaacagatataagtctcagcagtgttagattcccacagatcaaaagttaaagatatcctattaggaatagtagccagctgttgtttaatattgagtttc |
38299748 |
T |
|
| Q |
101 |
tctttcgtgtacaaat |
116 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
38299747 |
tcttcagtgtacaaat |
38299732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 115
Target Start/End: Complemental strand, 38308498 - 38308385
Alignment:
| Q |
2 |
aaacaaatataagtctcagtagtgttagattcccacaaatcaaaagataaagatatcctattaggaatggtagttaattgttgtttaagcttaggtttct |
101 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||| ||||| | |||||||||| ||| ||||||||||| | ||||||||| |||||| |||||| |
|
|
| T |
38308498 |
aaacaaatataagtgccagtagtacaagattcccacaactcaaaggttaaagatatcttataaggaatggtagccagttgttgtttgagcttatgtttct |
38308399 |
T |
|
| Q |
102 |
ctttcgtgtacaaa |
115 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
38308398 |
cttccgtgtacaaa |
38308385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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