View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13287_high_14 (Length: 286)

Name: NF13287_high_14
Description: NF13287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13287_high_14
NF13287_high_14
[»] chr2 (1 HSPs)
chr2 (1-286)||(34327958-34328244)


Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 34327958 - 34328244
Alignment:
Q  1 cacggcagcggtttccggtatacttatagacagaaatcacaaaccaatgtaaaaggtgtagtttcccttctcaaaagtaaaatagaaagtctaaatattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34327958 cacggcagcggtttccggtatacttatagacagaaatcacaaaccaatgtaaaaggtgtagtttcccttctcaaaagtaaaatagaaagtctaaatattt 34328057  T
Q  101 gtgttaatgttcatagaattaatcacattaatgtggttcagcttctttgatgagggagtttttcccttaatgaaaatatgaagtataagtcctttcaaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  34328058 gtgttaatgttcatagaattaatcacattaatgtggttcagcttctttgatgagggagtttttcccttaatgaaaatatgaagtttaagtcctttcaaat 34328157  T
Q  201 ttaaaagaaattgttg-aaaaagatatatactatgaagcaccgacaccggacatgagattgaaaataatttgagaaaatagattaat 286  Q
    |||||| ||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  34328158 ttaaaataaattgttgcagaaagatatatactatgaagcaccaacaccggacatgagattgaaaataatttgagaaaatagattaat 34328244  T

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