View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13287_low_10 (Length: 334)
Name: NF13287_low_10
Description: NF13287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13287_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 7118916 - 7118849
Alignment:
| Q |
19 |
agaggttcttacctattatatggtcgtaaaaaagttagaatctaaatcaaggggcactcactagattg |
86 |
Q |
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| T |
7118916 |
agaggttcttacctattatatggtcgtaaaaaagttagaacctaaatcaaggggcactcactagattg |
7118849 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 295
Target Start/End: Complemental strand, 31415417 - 31415365
Alignment:
| Q |
243 |
aaaaataagttgaattataaatttatgtataagactcaattttaaaattaaaa |
295 |
Q |
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| T |
31415417 |
aaaagtaagttgaattataaatttgtgtgtaagaatcaattctaaaattaaaa |
31415365 |
T |
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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 309
Target Start/End: Complemental strand, 32944713 - 32944646
Alignment:
| Q |
242 |
taaaaataagttgaattataaatttatgtataagactcaattttaaaattaaaaactacaaattcaat |
309 |
Q |
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| T |
32944713 |
taaaattaaattgaattataaatttgaatataaaattcaattttaaaattaaaaacttcaagttcaat |
32944646 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 306
Target Start/End: Complemental strand, 32101184 - 32101092
Alignment:
| Q |
213 |
aagtgacttgtgttcggaaaaatttatgttaaaaataagttgaattataaatttatgtataagactcaattttaaaattaaaaactacaaattc |
306 |
Q |
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| T |
32101184 |
aagtgatttgtgtgtggatacatttatgt-aaaagtgagttgaactataaatttgtatatgaaaattaattttaaaattaaaaactacaaattc |
32101092 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 308
Target Start/End: Original strand, 4401409 - 4401474
Alignment:
| Q |
243 |
aaaaataagttgaattataaatttatgtataagactcaattttaaaattaaaaactacaaattcaa |
308 |
Q |
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| T |
4401409 |
aaaaaaaagttgaattataaattggtgtgtaaaaatcaactttaaaatcaaaagctacaaattcaa |
4401474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 295
Target Start/End: Complemental strand, 26899909 - 26899856
Alignment:
| Q |
242 |
taaaaataagttgaattataaatttatgtataagactcaattttaaaattaaaa |
295 |
Q |
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| T |
26899909 |
taaaaataaggtgaattataaatttgtgtattcgaatcaagtttaaaattaaaa |
26899856 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 306
Target Start/End: Complemental strand, 26617543 - 26617487
Alignment:
| Q |
250 |
agttgaattataaatttatgtataagactcaattttaaaattaaaaactacaaattc |
306 |
Q |
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| T |
26617543 |
agttgaattataaatttatctataaaaatcaattttataatcaaaagctacagattc |
26617487 |
T |
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