View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13287_low_11 (Length: 330)
Name: NF13287_low_11
Description: NF13287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13287_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 10 - 316
Target Start/End: Original strand, 40190628 - 40190935
Alignment:
| Q |
10 |
aaaataaaaagcttttggaagttgaaac-accccttacttggtggcatttactttaccaaagaaatttaatttcagtgacacaaaaagtaagaaatcgta |
108 |
Q |
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||||| |||||| ||||||||||| ||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40190628 |
aaaatgaaaagcatttggaagttggaactacactttacttggtggcatttactttaccaaagaaatttaatttcagtgacacaaaaagtaagaaatcgta |
40190727 |
T |
|
| Q |
109 |
cctgattccactttcttgcttcactgtaccatccaacaacactgcaaaaacacaggaagtgcaaacacacaaataattatttctaccattatattcctaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40190728 |
cctgattccactttcttgcttcactgtaccatccaacaacactgcaaaaacacaggaagtgcaaacacacaaataattatttctaccattatattcctaa |
40190827 |
T |
|
| Q |
209 |
cctatagaacttgcataaaagaaaaatatagtaatatttcggcatacttatttcttggtcctttaactaaattttgaggttcaaattggtggctccaccc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40190828 |
cctatagaacttgcataaaagaaaaatatagtaatatttcggcatacttatttcttggtcctttaactaaattttgaggttcaaattggtggctccaccc |
40190927 |
T |
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| Q |
309 |
aaattggt |
316 |
Q |
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|||||||| |
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| T |
40190928 |
aaattggt |
40190935 |
T |
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