View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13287_low_19 (Length: 259)
Name: NF13287_low_19
Description: NF13287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13287_low_19 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 11 - 172
Target Start/End: Original strand, 51225750 - 51225913
Alignment:
| Q |
11 |
cataggcctaataagacaggctaagccggaaaatggatctatataaa--caagagataacacacaagaagacatggtgaaaattaacctttggatttgga |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
51225750 |
cataggcctaataagacaggctaagccggaaaatggatctatatatatacagaagataacacacaagaagacatggtgaaaattaacctttagatttgga |
51225849 |
T |
|
| Q |
109 |
gtcacaatttgtttattgtaaaaagctgatagtgacatctactacagtaagtaaaaatgttttt |
172 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51225850 |
gtcacaatttgtttattgtaaaaagctgatagtgacatctactacagtaagtaaaaatgttttt |
51225913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 243
Target Start/End: Original strand, 51225935 - 51225966
Alignment:
| Q |
212 |
tttttgcaatgttttattatacaacaagtttt |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
51225935 |
tttttgcaatgttttattatacaacaagtttt |
51225966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 25191683 - 25191645
Alignment:
| Q |
11 |
cataggcctaataagacaggctaagccggaaaatggatc |
49 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25191683 |
cataggcctaataagacaggctaagccggaaaatggatc |
25191645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University