View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13287_low_5 (Length: 404)
Name: NF13287_low_5
Description: NF13287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13287_low_5 |
 | |
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| [»] scaffold0001 (1 HSPs) |
| | |
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Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 19 - 397
Target Start/End: Original strand, 1058789 - 1059167
Alignment:
| Q |
19 |
ctttactgtcatgtggtggaaccaagaatgaaaactgttaatgaaagaattgaatgctctcacagccttgtgccgatgagaaaggccttcaaaggcactt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1058789 |
ctttactgtcatgtggtggaaccaagaatgaaaactgttaatgaaagaattgaatgctctcacagccttgtgccgatgagaaaggccttcaaaggcactt |
1058888 |
T |
|
| Q |
119 |
tcctggctgcaggaggttacgaccgaaatgatgggatcaatgccatagctgaaaataggacagaccttgttgtatatggtcgtttgttcttagctaatcc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1058889 |
tcctggctgcaggaggttacgaccgaaatgatgggatcaatgccatagctgaaaataggacagaccttgttgtatatggtcgtttgttcttagctaatcc |
1058988 |
T |
|
| Q |
219 |
agatttgccgaagagatttgcacttgatgctcctctaaacaagtataacagggcgacattctacacttcagatccagttataggttatactgactaccct |
318 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1058989 |
agatttgccgaagagatttgcacttaatgctcctctaaacaagtataacagggcgacattctacacttcagatccagttataggttatactgactaccct |
1059088 |
T |
|
| Q |
319 |
tttcttgaatgaagaaaccagtgttgtagcatcaaagtgtggaatctcttcactaaataagttcaatacccctttgcta |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1059089 |
tttcttgaatgaagaaaccagtgttgtagcatcaaagtgtggaatctcttcactaaataagttcaatacccctttgcta |
1059167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 392
Target Start/End: Original strand, 1065881 - 1066254
Alignment:
| Q |
19 |
ctttactgtcatgtggtggaaccaagaatgaaaactgttaatgaaagaattgaatgctctcacagccttgtgccgatgagaaaggccttcaaaggcactt |
118 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||||| || ||||||| | ||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
1065881 |
ctttactgtcatatggtggaaccaagaatgaaaactgttggtgaaaaaactgaatgccccgacagccttgtgccaatgagaaaggccttcaaaggcactt |
1065980 |
T |
|
| Q |
119 |
tcctggctgcaggaggttacgaccgaaatgatgggatcaatgccatagctgaaaataggacagaccttgttgtatatggtcgtttgttcttagctaatcc |
218 |
Q |
| |
|
|| ||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1065981 |
tcatggttgcaggaggttacgaccgacatgatgggatcaatgccatagctgaaaacagggcagaccttgttgtatatggtcgtttgttcttagctaatcc |
1066080 |
T |
|
| Q |
219 |
agatttgccgaagagatttgcacttgatgctcctctaaacaagtataacagggcgacattctacacttcagatccagttataggttatactgactaccct |
318 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||| ||||| |||||||||| ||| ||||||| ||| ||||||||| ||||||||||||||||||| |
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|
| T |
1066081 |
agatttaccaaagagatttgcacttgatgctcctctgaacaaatataacagggagacgttctacatttctgatccagttctaggttatactgactacccc |
1066180 |
T |
|
| Q |
319 |
tttcttgaatgaagaaaccagtgttgtagcatcaaagtgtggaatctcttcactaaataagttcaatacccctt |
392 |
Q |
| |
|
|||||||||||||||||| || ||||||||| |||||||||||||| |||||||||||||||| || ||||| |
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|
| T |
1066181 |
tttcttgaatgaagaaactgatgctgtagcatccaagtgtggaatctcctcactaaataagttcattatccctt |
1066254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 392
Target Start/End: Original strand, 1071608 - 1071981
Alignment:
| Q |
19 |
ctttactgtcatgtggtggaaccaagaatgaaaactgttaatgaaagaattgaatgctctcacagccttgtgccgatgagaaaggccttcaaaggcactt |
118 |
Q |
| |
|
||||| ||||| |||||||||||||||||| ||||||| ||||| || ||||||| | ||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
1071608 |
ctttattgtcacatggtggaaccaagaatgataactgttggtgaaaaaactgaatgccccgacagccttgtgccaatgagaaaggccttcaaaggcactt |
1071707 |
T |
|
| Q |
119 |
tcctggctgcaggaggttacgaccgaaatgatgggatcaatgccatagctgaaaataggacagaccttgttgtatatggtcgtttgttcttagctaatcc |
218 |
Q |
| |
|
|| ||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1071708 |
tcatggttgcaggaggttacgaccgacatgatgggatcaatgccatagctgaaaacagggcagacctagttgtatatggtcgtttgttcttagctaatcc |
1071807 |
T |
|
| Q |
219 |
agatttgccgaagagatttgcacttgatgctcctctaaacaagtataacagggcgacattctacacttcagatccagttataggttatactgactaccct |
318 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||| ||||||||| |||||||||||||||||||| |
|
|
| T |
1071808 |
agatttgccaaagagatttgcacttgatgctcctctaaacaagtataacagggagacattttacgtttctgatccagttctaggttatactgactaccct |
1071907 |
T |
|
| Q |
319 |
tttcttgaatgaagaaaccagtgttgtagcatcaaagtgtggaatctcttcactaaataagttcaatacccctt |
392 |
Q |
| |
|
|||||||||||||| |||| ||| ||||||||| |||||||||||||| |||||||||||| ||| || ||||| |
|
|
| T |
1071908 |
tttcttgaatgaaggaaccggtgctgtagcatccaagtgtggaatctcctcactaaataaggtcattatccctt |
1071981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 19 - 346
Target Start/End: Original strand, 1033879 - 1034206
Alignment:
| Q |
19 |
ctttactgtcatgtggtggaaccaagaatgaaaactgttaatgaaagaattgaatgctctcacagccttgtgccgatgagaaaggccttcaaaggcactt |
118 |
Q |
| |
|
||||||||||| |||||||||||||||| ||| | | |||||| |||||| || || |||| || ||||| ||||||||||| ||||| || |||| |
|
|
| T |
1033879 |
ctttactgtcacatggtggaaccaagaataaaatcaaatgatgaaacgattgaaagcccttacagtctggtgcccatgagaaaggctttcaatggtactt |
1033978 |
T |
|
| Q |
119 |
tcctggctgcaggaggttacgaccgaaatgatgggatcaatgccatagctgaaaataggacagaccttgttgtatatggtcgtttgttcttagctaatcc |
218 |
Q |
| |
|
|| ||| ||| |||||||| ||| || | |||||||||||||| ||||| || |||||| |||| |||||||| |||||||||||||||||||| ||||| |
|
|
| T |
1033979 |
tcatggttgcgggaggttatgacagacaagatgggatcaatgctatagcagataatagggcagatcttgttgtttatggtcgtttgttcttagcgaatcc |
1034078 |
T |
|
| Q |
219 |
agatttgccgaagagatttgcacttgatgctcctctaaacaagtataacagggcgacattctacacttcagatccagttataggttatactgactaccct |
318 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||| || || |||||||||| ||||||||||||||| ||||| ||| |||||||||| ||||| || |
|
|
| T |
1034079 |
agatttgccgaagagatttgcactaaacgctcctctcaataaatataacagggagacattctacacttctgatccggttgtaggttatacggactatccc |
1034178 |
T |
|
| Q |
319 |
tttcttgaatgaagaaaccagtgttgta |
346 |
Q |
| |
|
||||||||||||||||| || ||||||| |
|
|
| T |
1034179 |
tttcttgaatgaagaaaacaatgttgta |
1034206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 19 - 346
Target Start/End: Original strand, 1044266 - 1044593
Alignment:
| Q |
19 |
ctttactgtcatgtggtggaaccaagaatgaaaactgttaatgaaagaattgaatgctctcacagccttgtgccgatgagaaaggccttcaaaggcactt |
118 |
Q |
| |
|
||||||||||| |||||||||||||||| ||| | | | ||||| |||||| || || |||| || ||||| ||||||||||| ||||| ||| ||| |
|
|
| T |
1044266 |
ctttactgtcacatggtggaaccaagaataaaatcagcttctgaaacgattgaaagcccttacagtctggtgccaatgagaaaggctttcaatggctctt |
1044365 |
T |
|
| Q |
119 |
tcctggctgcaggaggttacgaccgaaatgatgggatcaatgccatagctgaaaataggacagaccttgttgtatatggtcgtttgttcttagctaatcc |
218 |
Q |
| |
|
|| ||||||||||||| || ||| || | || |||||| |||| ||||||||||| | | |||| ||||| || |||||||||||||||||||| ||||| |
|
|
| T |
1044366 |
tcatggctgcaggaggctatgacagacaagacgggatcgatgctatagctgaaaacaaggcagatcttgtagtttatggtcgtttgttcttagcaaatcc |
1044465 |
T |
|
| Q |
219 |
agatttgccgaagagatttgcacttgatgctcctctaaacaagtataacagggcgacattctacacttcagatccagttataggttatactgactaccct |
318 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||| ||||||||||| |||| ||||||||||| ||| ||||| ||| | ||||| |||||||| || |
|
|
| T |
1044466 |
agatttgccaaagagatttgcacttaatgctcctctcaacaagtataatagggagacattctacatttctgatccggttgttggttacactgactatccc |
1044565 |
T |
|
| Q |
319 |
tttcttgaatgaagaaaccagtgttgta |
346 |
Q |
| |
|
||||||||||||||||| || ||||||| |
|
|
| T |
1044566 |
tttcttgaatgaagaaaacaatgttgta |
1044593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 148 - 328
Target Start/End: Original strand, 1053653 - 1053833
Alignment:
| Q |
148 |
gatgggatcaatgccatagctgaaaataggacagaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgcacttgatg |
247 |
Q |
| |
|
||||| |||||||| ||||||||||||||| |||| ||| ||| ||||||||||||||| || ||||||||||||| || ||||||||||||||| ||| |
|
|
| T |
1053653 |
gatggaatcaatgctatagctgaaaatagggcagatcttattgcttatggtcgtttgttcatatctaatccagatttaccaaagagatttgcacttaatg |
1053752 |
T |
|
| Q |
248 |
ctcctctaaacaagtataacagggcgacattctacacttcagatccagttataggttatactgactacccttttcttgaat |
328 |
Q |
| |
|
||||||| ||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1053753 |
ctcctcttaacaagtataatagggagacattctacacttctgatccagttataggttatactgactacccttctcttgaat |
1053833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 19 - 325
Target Start/End: Complemental strand, 1640677 - 1640371
Alignment:
| Q |
19 |
ctttactgtcatgtggtggaaccaagaatgaaaactgttaatgaaagaattgaatgctctcacagccttgtgccgatgagaaaggccttcaaaggcactt |
118 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||| ||||| | ||||||| ||||||| | ||||| |||||||| |||||||| || |||| |
|
|
| T |
1640677 |
ctttactgtcacatggtggaaccaagaatgaaaactattactgaaaaagttgaatgtcttcacagcttggtgccaatgagaaaagccttcaatggaactt |
1640578 |
T |
|
| Q |
119 |
tcctggctgcaggaggttacgaccgaaatgatgggatcaatgccatagctgaaaataggacagaccttgttgtatatggtcgtttgttcttagctaatcc |
218 |
Q |
| |
|
| | | ||| ||||| || ||| | |||||||| ||||||||| |||||||| |||||| ||||||| |||||||| ||||| || ||||||| |
|
|
| T |
1640577 |
ttatagttgccggaggctattcgcgacaagatgggattgatgccatagttgaaaataagacagatcttgttgcttatggtcgcttgtttatatctaatcc |
1640478 |
T |
|
| Q |
219 |
agatttgccgaagagatttgcacttgatgctcctctaaacaagtataacagggcgacattctacacttcagatccagttataggttatactgactaccct |
318 |
Q |
| |
|
|||||| || |||||||| || || ||||||||||| |||||||||||| ||| ||||||||||| || ||||| ||| | |||||||| ||||||||| |
|
|
| T |
1640477 |
agatttaccaaagagattcgcgctcgatgctcctctcaacaagtataaccgggaaacattctacacatctgatccggttctcggttatacagactaccct |
1640378 |
T |
|
| Q |
319 |
tttcttg |
325 |
Q |
| |
|
||||||| |
|
|
| T |
1640377 |
tttcttg |
1640371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 151 - 336
Target Start/End: Original strand, 1046984 - 1047169
Alignment:
| Q |
151 |
gggatcaatgccatagctgaaaataggacagaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgcacttgatgctc |
250 |
Q |
| |
|
||||||||||| ||||||||||||||| ||| ||||||| || | ||||| ||| ||||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
1046984 |
gggatcaatgctatagctgaaaatagggtagatcttgttgcttacgaccgtttattcatagctaatccagatttgccaaagagatttgcacttaatgctc |
1047083 |
T |
|
| Q |
251 |
ctctaaacaagtataacagggcgacattctacacttcagatccagttataggttatactgactacccttttcttgaatgaagaaac |
336 |
Q |
| |
|
| |||||||||||||| | || |||||||| |||||| ||||||||| | |||||||| |||||||||||||||||||||| |||| |
|
|
| T |
1047084 |
ccctaaacaagtataatatggagacattctgcacttctgatccagttcttggttataccgactacccttttcttgaatgaataaac |
1047169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 157 - 240
Target Start/End: Original strand, 65854 - 65937
Alignment:
| Q |
157 |
aatgccatagctgaaaataggacagaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgca |
240 |
Q |
| |
|
||||| ||||| ||||||| | |||| |||||||| |||||||||| |||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
65854 |
aatgctatagcagaaaataaggcagatcttgttgtttatggtcgttcgttcttagctaatccaaatttgccaaagagatttgca |
65937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 12121399 - 12121338
Alignment:
| Q |
179 |
cagaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgca |
240 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
12121399 |
cagatcttgttgtttatggtcgtttgttcttagctaatccagatttgccaatgagatttgca |
12121338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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