View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13287_low_8 (Length: 352)
Name: NF13287_low_8
Description: NF13287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13287_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 11 - 334
Target Start/End: Complemental strand, 3332589 - 3332266
Alignment:
| Q |
11 |
cacagatcaagatgaacaaagcggaagtagcagcggcggtggactcaacctcacaaaccgagaagaaaacagcaacaacaagttcagcacagattttagc |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3332589 |
cacagatcaagatgaacaaagcggaagtagcagcggcggtggactcaacctcacaaaccgagaagaaaacagcaacaacaagttcagcacagattttagc |
3332490 |
T |
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| Q |
111 |
cccaagttagaatccggaggaggtggttccggtggcgacaccgattcaatgacaagaagaccaagaggaagaccagctggatccaaaaacaaaccaaaac |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3332489 |
cccaagttagaatccggaggaggtggttccggtggcgacaccgattcaatgacaagaagaccaagaggaagaccagctggatccaaaaacaaaccaaaac |
3332390 |
T |
|
| Q |
211 |
caccgattatcatcacacgtgacagcgcaaacgccttgaaaactcacgtgatggaagttgcagacggttgtgacgttgttgaaagtgtcaacaactttgc |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3332389 |
caccgattatcatcacacgtgacagcgcaaacgccttgaaaactcacgtgatggaagttgcagacggttgtgacgttgttgaaagtgtcaacaacttcgc |
3332290 |
T |
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| Q |
311 |
tagacgccgtcaaagaggcgtttg |
334 |
Q |
| |
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| T |
3332289 |
tagacgccgtcaaagaggcgtttg |
3332266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 244
Target Start/End: Complemental strand, 13212894 - 13212814
Alignment:
| Q |
164 |
aagaagaccaagaggaagaccagctggatccaaaaacaaaccaaaaccaccgattatcatcacacgtgacagcgcaaacgc |
244 |
Q |
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| T |
13212894 |
aagaagaccaagaggaagaccagcaggttcgaaaaacaaaccaaaaccacctatcatcatcacgagggacagcgcgaacgc |
13212814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 32803278 - 32803230
Alignment:
| Q |
166 |
gaagaccaagaggaagaccagctggatccaaaaacaaaccaaaaccacc |
214 |
Q |
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|||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
32803278 |
gaagaccaagaggaagaccacctggatccaaaaacagaccaaaaccacc |
32803230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 16578617 - 16578665
Alignment:
| Q |
166 |
gaagaccaagaggaagaccagctggatccaaaaacaaaccaaaaccacc |
214 |
Q |
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|||||||||||||||||||| | || || |||||||||||||||||||| |
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| T |
16578617 |
gaagaccaagaggaagaccacccggttcaaaaaacaaaccaaaaccacc |
16578665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 166 - 201
Target Start/End: Complemental strand, 32809738 - 32809703
Alignment:
| Q |
166 |
gaagaccaagaggaagaccagctggatccaaaaaca |
201 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||| |
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| T |
32809738 |
gaagaccaagaggaagaccacctggatccaaaaaca |
32809703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 46200911 - 46200964
Alignment:
| Q |
174 |
agaggaagaccagctggatccaaaaacaaaccaaaaccaccgattatcatcaca |
227 |
Q |
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|||||| | ||| |||| || |||||||||||||||||||| |||||||||||| |
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| T |
46200911 |
agaggacgtccacctggctcaaaaaacaaaccaaaaccacctattatcatcaca |
46200964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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