View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13287_low_9 (Length: 342)
Name: NF13287_low_9
Description: NF13287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13287_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 34327978 - 34327642
Alignment:
| Q |
1 |
ataccggaaaccgctgccgtggcaagagaaactgttactcccaccaagactattttcttcttgtggacctcattggcattttctaagtgaatttaaccaa |
100 |
Q |
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| T |
34327978 |
ataccggaaaccgctgccgtggcaagagaaactgtttctcccaccaaaactcctttcttcttgtgaccctcattggcatttcctaagtgaatttcaccaa |
34327879 |
T |
|
| Q |
101 |
acagaaaaccatagttagatcaaaatctcatacaggggacacaaatattcaatgattaatataacatatcataagctaagctcaaaccgtctaatatcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
34327878 |
acagaaaaccatagttagatcaaaatctcatacaggggacacaaatattcaatgattaatataagatatcataagctaagctcaaactgtctaatatcaa |
34327779 |
T |
|
| Q |
201 |
ttaaatcaccaaaccacaaggcacatccactcccttctcttacatctaaattttcatatgccatacaagaacaattatccaaacacttcactctacattc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34327778 |
ttaaatcaccaaaccacaaggcacatccactcccttctcttacatctaaatttgcatatgccatacaagaacaattatccaaacacttcactctacattc |
34327679 |
T |
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| Q |
301 |
cttcaaaccaattgtctcatccaaccaactatctgtg |
337 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
34327678 |
cttcaaaccaattgtctcatccaaccaactatctgtg |
34327642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 23562004 - 23562052
Alignment:
| Q |
191 |
ctaatatcaattaaatcaccaaaccacaaggcacatccactcccttctc |
239 |
Q |
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|||||||||||||||||||||||||||| | |||| ||||| ||||||| |
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| T |
23562004 |
ctaatatcaattaaatcaccaaaccacatgacacagccactgccttctc |
23562052 |
T |
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