View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13288_low_1 (Length: 790)
Name: NF13288_low_1
Description: NF13288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13288_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 392 - 772
Target Start/End: Original strand, 8446166 - 8446551
Alignment:
| Q |
392 |
ttacaaagggaaagagttagggacaaagattagaacaatagagcata-----------ccctgtaatttacaaaaattagatactttagtctcttatgtt |
480 |
Q |
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| T |
8446166 |
ttacaaagggaaagagttagggacaa-gattagaacaatagagaatagaggtgaagatccctgtaatttacaaaaattagatactttagtctcttatgtt |
8446264 |
T |
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| Q |
481 |
cgtacccctagaaatccactttagattatattatattagtttttatgccaaaggaatagctagtgtgccataatttagcttcctagatcactagaggcca |
580 |
Q |
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| T |
8446265 |
cgtacccctagaaatccactttagattagattatattagtttttatgccaaaggaatagctagtgtgccataatttagcttcctagatcactggagg--- |
8446361 |
T |
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| Q |
581 |
agtgacatttttcaagataatcaaaatttagaatcaaagcttaacaatttagcatcctagatcactcgaatcaaaatgttcatcatacaaataaagaaaa |
680 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8446362 |
--tgacatttttcaagataatcaaaatttagaatcaaagcttaacaatttagcatcctaaatcactcgaatcaaaatgttcatcatacaaataaagaaaa |
8446459 |
T |
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| Q |
681 |
ggagccatgtcaacaatcacgatagaaagtgaaaaatattataaaatgcatagaaagcatagtactggtcgttattaatctgctgatctaac |
772 |
Q |
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| T |
8446460 |
ggagccatgtcaacaatcacgatagaaattgaaaaatattataaaatgcatagaaagcatagtactggtcgttattaatctgctgatctaac |
8446551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 169 - 434
Target Start/End: Original strand, 8445876 - 8446141
Alignment:
| Q |
169 |
ggccttctaattattattatccaagttaagtgattttgttactaatttatacttgttgctatcataatcttgaatgaaaaccctggaactccactagtgt |
268 |
Q |
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| T |
8445876 |
ggccttctaattattattatccaagttaagtgattt-gttactaatttatacttgttgctatcataatcttgaatgaaaaccctggaactccactagtgt |
8445974 |
T |
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| Q |
269 |
atgctatggtcccaagtttgaataaggcatgggcaggggcgatgtcgcttttgggagacagagtattcc-aatccacaatagaaacaagatcaaagggag |
367 |
Q |
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| T |
8445975 |
atgctatggtcccaagtttgaataaagcatgggcaggggtgatgtcgcttttgggagacagagtattccaaatccacaatagaaacaagatcaaagggag |
8446074 |
T |
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| Q |
368 |
acggggaagaaaacagttgagggattacaaagggaaagagttagggacaaagattagaacaatagag |
434 |
Q |
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| T |
8446075 |
acggggaagaaaacagttgagggattacaaagggaaagagttagggacaaagattagaacaatagag |
8446141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 8445814 - 8445874
Alignment:
| Q |
7 |
gcagcacagactgaacctccctataatatttggcgctctaagcctactaaagcacacacaa |
67 |
Q |
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| T |
8445814 |
gcagcacagactgaacctccctataatatttggcgctctaagcctaccaaagcacacacaa |
8445874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 142 - 185
Target Start/End: Original strand, 43061967 - 43062010
Alignment:
| Q |
142 |
tttagattttggtattgttttgtgtttggccttctaattattat |
185 |
Q |
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| T |
43061967 |
tttagattttggtattgttttgtggttggtcttctaattattat |
43062010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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