View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13288_low_10 (Length: 310)

Name: NF13288_low_10
Description: NF13288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13288_low_10
NF13288_low_10
[»] chr4 (3 HSPs)
chr4 (54-206)||(38038353-38038528)
chr4 (2-55)||(54751823-54751876)
chr4 (246-298)||(38038530-38038582)
[»] chr5 (1 HSPs)
chr5 (2-54)||(30410814-30410866)
[»] chr8 (1 HSPs)
chr8 (4-55)||(18022258-18022309)
[»] chr3 (1 HSPs)
chr3 (4-55)||(9179901-9179952)
[»] chr2 (2 HSPs)
chr2 (22-55)||(3925839-3925872)
chr2 (202-242)||(39452665-39452705)


Alignment Details
Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 54 - 206
Target Start/End: Original strand, 38038353 - 38038528
Alignment:
Q  54 tcactttgggacactcgcatttagaacgctgcttaaatgtaataatcttg--------------------tttgtttgtttaggttttgcttagggaaaa 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||                    ||||||||||||||||||||||||||||||    
T  38038353 tcactttgggacactcgcatttagaacgctgcttaaatgtaataatcttgttgtagcttcttctgacttgtttgtttgtttaggttttgcttagggaaaa 38038452  T
Q  134 tcagtttcttgctgtgtcccctttccttg---gtagtagtactatgttttcttatgtgactcaaaatcttgttgtt 206  Q
    ||| |||||||||||||||||||||| ||   ||||||||| |||||||||||||||||||| | |||||||||||    
T  38038453 tcactttcttgctgtgtcccctttccctggtagtagtagtagtatgttttcttatgtgactcgatatcttgttgtt 38038528  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 54751823 - 54751876
Alignment:
Q  2 cgctcattctctgccgctcgccgctcgctcaactccgattaaccttcaggtttc 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54751823 cgctcattctctgccgctcgccgctcgctcaactccgattaaccttcaggtttc 54751876  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 246 - 298
Target Start/End: Original strand, 38038530 - 38038582
Alignment:
Q  246 tgttctgttctgttcttatgctgttaattgtgcaattgatacatgctgtttga 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38038530 tgttctgttctgttcttatgctgttaattgtgcaattgatacatgctgtttga 38038582  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 30410866 - 30410814
Alignment:
Q  2 cgctcattctctgccgctcgccgctcgctcaactccgattaaccttcaggttt 54  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30410866 cgctcattctctgccgctcgccgctcgctcaactccgattaaccttcaggttt 30410814  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 18022258 - 18022309
Alignment:
Q  4 ctcattctctgccgctcgccgctcgctcaactccgattaaccttcaggtttc 55  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  18022258 ctcattctctgccgctcgccgctcgctcaactccgattaacctttaggtttc 18022309  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 9179952 - 9179901
Alignment:
Q  4 ctcattctctgccgctcgccgctcgctcaactccgattaaccttcaggtttc 55  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  9179952 ctcattctctaccgctcgccgctcgctcaactccgattaaccttcaggtttc 9179901  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 3925839 - 3925872
Alignment:
Q  22 ccgctcgctcaactccgattaaccttcaggtttc 55  Q
    ||||||||||||||||||||||||||||||||||    
T  3925839 ccgctcgctcaactccgattaaccttcaggtttc 3925872  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 39452665 - 39452705
Alignment:
Q  202 ttgttgttatacaagtattatcgctacttgttttgttaatt 242  Q
    |||||||||||||||||||||| ||  ||||||||||||||    
T  39452665 ttgttgttatacaagtattatcactgtttgttttgttaatt 39452705  T

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