View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13288_low_12 (Length: 277)
Name: NF13288_low_12
Description: NF13288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13288_low_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 32525815 - 32525554
Alignment:
| Q |
1 |
atgatttcaccaaaggcgaagaagcacaacaaacgtagcaactcaaaagtgcattcgtaacagatggtatcaacaatgttcccaatttgataacctcaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32525815 |
atgatttcaccaaaggcgaagaagcacaacaaacgtagcaacttaaaagtgcattcgtaacagatggtatcaacaatgttcccaatttgataacctcaca |
32525716 |
T |
|
| Q |
101 |
atgtagcatttgacaatgccgctcttcgtccgctatcaatgatagagcagaaagcacgctggagaacgtaaacggatcaggtaaaaagccgtatcttttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32525715 |
atgtagcatttgacaatgccgctcttcgtccgctatcaatgatagagcagaaagcacgctggagaacgtaaatggatcaggtaaaaagccgtatcttttc |
32525616 |
T |
|
| Q |
201 |
atttgaacgaagagattaagcgcagcgtgtccatcgttaccatgagaatacgcggtgatcat |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
32525615 |
atttgaacgaagagattaagcgcagcgtgtccatcgttaccatgagaatacgcagtgatcat |
32525554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University