View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13288_low_13 (Length: 264)
Name: NF13288_low_13
Description: NF13288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13288_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 14765658 - 14765423
Alignment:
| Q |
18 |
agtaggaaaatgtttatgcttgaaccaaaatcgagatctcaacaatttttgattaagcaggccgttgtccta-tatgggattccttaagatgtataaaac |
116 |
Q |
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| T |
14765658 |
agtaggaaaatgtttatgcttgaaccaaaatcgagatctcaacaatttttgattaagcaggccgttgtcctaatatgggattccttaagatgtataaaac |
14765559 |
T |
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| Q |
117 |
cattcaaaataagtgtacagctataacgtacatggatacaaggattcaaaaatcttccacaccaccaagaagtgtgcagcaaccatgacaaattaacaac |
216 |
Q |
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| T |
14765558 |
cattcaaaataagtgtacagctataacgtacatggatacaaggattcaaaaatcttccacaccaccaagaagtgtgcagcaaccatgacaaatcaacaac |
14765459 |
T |
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| Q |
217 |
tgacttccgattcccttgtatggtttttgtaatatt |
252 |
Q |
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| T |
14765458 |
tggcttccgattcccttgtatggtttttgtaatatt |
14765423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 3319997 - 3320043
Alignment:
| Q |
22 |
ggaaaatgtttatgcttgaaccaaaatcgagatctcaacaatttttg |
68 |
Q |
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| T |
3319997 |
ggaaaatgtttatgcttgaaccaaaattgagatctcagcaatttttg |
3320043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 3389071 - 3389021
Alignment:
| Q |
26 |
aatgtttatgcttgaaccaaaatcgagatctcaacaatttttgattaagca |
76 |
Q |
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||||||||||||||||||| ||| |||||||||||||||||||||| |||| |
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| T |
3389071 |
aatgtttatgcttgaaccataattgagatctcaacaatttttgattgagca |
3389021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 8369971 - 8369941
Alignment:
| Q |
18 |
agtaggaaaatgtttatgcttgaaccaaaat |
48 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
8369971 |
agtaggaaaatgtttatgcttgaaccaaaat |
8369941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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