View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13288_low_17 (Length: 250)
Name: NF13288_low_17
Description: NF13288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13288_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 34959051 - 34959292
Alignment:
| Q |
1 |
ttaacaagtgcgcctcatcaac----aatagtacatatttgttgtaacggtgaaacaagtctaagatccagcctcatgtgcacattgattgaaactatat |
96 |
Q |
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| T |
34959051 |
ttaacaagtgcgcctcatcaacgtacaatagtacatatttgttgtaacggtgaaacaagtctaagatccagcctcatgtgcacattg----aaactatat |
34959146 |
T |
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| Q |
97 |
taatcatctctcaaagttcaaagaaattggcttcaaaaaatgcttttcaaaatctggaaaacttgacctttttggcatatgatgcatgcattttatttta |
196 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34959147 |
taatcatctctcaaagttcttagaaattggcttcaaaaaatgcttttcaaaatctggaaaacttgacctttttggcatatgatgcatgcattttatttta |
34959246 |
T |
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| Q |
197 |
aagatatgattcatttacatttcactcttgtatataacttcatctc |
242 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
34959247 |
aagatatgattcatttgcatttcactcttgtatataacttcgtctc |
34959292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 20 - 227
Target Start/End: Complemental strand, 3921523 - 3921320
Alignment:
| Q |
20 |
aacaatagtacatatttgttgtaacggtgaaacaagtctaagatccagcctcatgtgcacattgattgaaactatattaatcatctctcaaagttcaaag |
119 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||| |
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| T |
3921523 |
aacaatagtacatatttgttgtaactgtgaaacaagtctaagatccagcctcatgtgcacattga----acctatattaatcatctctcacagttcaaag |
3921428 |
T |
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| Q |
120 |
aaattggcttcaaaaaatgcttttcaaaatctggaaaacttgacctttttggcatatgatgcatgcattttattttaaagatatgattcatttacatttc |
219 |
Q |
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||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
3921427 |
aaattggtttcagaaaatgcttttcaaaatctggaaagcttgacctttttggcatatgatgcatgcattttattttaaagatatgattcatctgcatttc |
3921328 |
T |
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| Q |
220 |
actcttgt |
227 |
Q |
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|||||||| |
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| T |
3921327 |
actcttgt |
3921320 |
T |
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