View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13288_low_5 (Length: 547)
Name: NF13288_low_5
Description: NF13288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13288_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 536
Target Start/End: Original strand, 52546025 - 52546544
Alignment:
| Q |
1 |
catcagaagatgtctatagtgcaccaatttggatttgctgtggttaaatatccacgtattcaagtagtcagagatgtcagtggctgttggattgagattg |
100 |
Q |
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| T |
52546025 |
catcagaagatgtctatagtgcaccaatttggatttgctgtggttaaatatccacgtattcaagtagtcagagatgtcggtggctgttggattgagattg |
52546124 |
T |
|
| Q |
101 |
gatgatctaaattttaatacatattttgattattttnnnnnnnctgaaatactgaactcaatctcgagccaacggctactgacgtccctccctaactgtg |
200 |
Q |
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| T |
52546125 |
gatgatctaaattttaatacatattttgattattttaaaaaaactgaaatactgaactcgatctcgagccaacggctactgacgtccctccctaactgtg |
52546224 |
T |
|
| Q |
201 |
tgaatgcgaagactatgactgcaacaaatcgatattgtacaagttcaagctgataatttattagtttgttattggaatgaagaaaataactaagtgagaa |
300 |
Q |
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| T |
52546225 |
tgaatgcgaagactatgactgcaacaaatcgatattgtacaagttctagctgataatttattagtttgttattgaaatggagaaaataactaagtgagaa |
52546324 |
T |
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| Q |
301 |
ttgacagtaattgaaatggtaaatataccctttgaggagcatcatatgatttgtgagcatgacaagttccttctcgaaaatttccacaagtaccttgtgg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
52546325 |
ttgacagtaattgaaatggtaaatataccctttgaggagcatcatatgatttgtgagcatgacaagttccttctcgaaagtttcgacaagtaccttgtgg |
52546424 |
T |
|
| Q |
401 |
caatccatagctagcaaatttaatttgggtgatcttttgtccaatgggacaccacaagtcagctagtctattaacttggttactaagtgttggctgattt |
500 |
Q |
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| T |
52546425 |
caatccatagctagcaaatttaatttgggtgatcttttgtccaatgggacaccgcaagtcagctag----------------ctaagtgttggctgattt |
52546508 |
T |
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| Q |
501 |
tcatatatgtcagcacacacacttcctgttgttctt |
536 |
Q |
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| T |
52546509 |
tcatatatgtcagcacacacacttcctgttgttctt |
52546544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 86 - 136
Target Start/End: Original strand, 37846405 - 37846455
Alignment:
| Q |
86 |
gttggattgagattggatgatctaaattttaatacatattttgattatttt |
136 |
Q |
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| T |
37846405 |
gttggattgagattcgaagatctaatttttaatacatattttgattttttt |
37846455 |
T |
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