View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13288_low_6 (Length: 497)
Name: NF13288_low_6
Description: NF13288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13288_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 15 - 480
Target Start/End: Original strand, 18243942 - 18244411
Alignment:
| Q |
15 |
atgaatgacttgttggaccacacctatattgagcaacttccgtggaaaattctgcagcnnnnnnnggacttatttgaagatcatgtagcacctactccaa |
114 |
Q |
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| T |
18243942 |
atgaatgacttgttggaccacacctatattgagcaacttccgtggaaaattctgcagctttttttggacttatttgaagatcatgtagcacctactccaa |
18244041 |
T |
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| Q |
115 |
ggaagtcaaaaaattgaggagtttcaacagcatctggggtgtcatcaatcagaactttttcactgttttctgcattatgatgtgttgctgatgctgctga |
214 |
Q |
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| T |
18244042 |
ggaagtcaaaaaattgaggagtttcaacagcatctggggtgtcatcaaccagaactttttcactgttttctgcattatgatgtgttgctgatgctgctga |
18244141 |
T |
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| Q |
215 |
tgaatttgagaaaatttgaaaattgtgattgttttgattttgctttgtcatcaaatattgttgaggataatgatggtagaaaccatttagttgctgatat |
314 |
Q |
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| T |
18244142 |
tgaatttgagaaaatgtgaaaattgtgattgttttgattttgctttgtcatcaaatattgttgaggataatgatggtagaaaccatttagttgttgatat |
18244241 |
T |
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| Q |
315 |
tcatctttagtgccatcccagtatctgatctgattgaatggttcttccaccatgtcattgcttctaccaacttcaaattaaaccaaattatgttaattaa |
414 |
Q |
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| T |
18244242 |
tcatctttagtgccatcccagtatctgatctgattgaatggttcttccaccatgtcattgcttctaccaacttcaaattaaaccaaattatgttaattaa |
18244341 |
T |
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| Q |
415 |
taggactgaaactacaaaagaacatgct----tatatcatatgtgtgacaaagaatgaagggttatattt |
480 |
Q |
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| T |
18244342 |
ttggactgaaactacaaaagaacatgcttatatatatcatatgtgtgacaaagaatgaagggttatattt |
18244411 |
T |
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