View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13288_low_7 (Length: 469)
Name: NF13288_low_7
Description: NF13288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13288_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-131; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 15 - 264
Target Start/End: Original strand, 35551220 - 35551469
Alignment:
| Q |
15 |
gattttgggtttgagcgatgaagaaggagcgttggtcttgattgcactgtgatatcagggaagggaatggggagaaggcgtagaagaaagtcgtttccgt |
114 |
Q |
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| T |
35551220 |
gattttggctttgagctatgaagaaggagcgttggtcttgattgcactgtgatatcagggaagggaatggggagaaggcgtagaagaaagtcgtttccgt |
35551319 |
T |
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| Q |
115 |
gcttgggtttataaagttgttttcttagcgattaataatcctacactagtggagggtgacacaacacaactaaagagaatcaatcgcaacaactttatga |
214 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35551320 |
gcttgggtttataaagttgtttacttagcgattaataatcctacactagtggagggtgacacaacacaactaaagagaatcaatcgcaacaactttatga |
35551419 |
T |
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| Q |
215 |
atttacacttgtcaagaggattccaacctcggagctaaagacaatttgtc |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35551420 |
atttacacttgtcaagaggattccaacctcggagctaaagacaatttgtc |
35551469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 328 - 449
Target Start/End: Original strand, 18022053 - 18022174
Alignment:
| Q |
328 |
ggcaaaagttttggtgcataagtccttcccttatgcaccctacataagctcttttcaaccttcagattggttttacacgtgtaataatctcagctcacac |
427 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18022053 |
ggcaaaagttatggtgcataagtccttcccttatgcaccctgcataagctcttttcaaccttcagattggttttacacgtgtaataatctcagctcacac |
18022152 |
T |
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| Q |
428 |
tctccttcacatctcatactct |
449 |
Q |
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| T |
18022153 |
tctccttcacatctcatactct |
18022174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 257 - 327
Target Start/End: Original strand, 35551495 - 35551565
Alignment:
| Q |
257 |
aatttgtcgttttaaaatcctacaccgttaaactaaagttatttatatgaggtgtccgagaacttacaaga |
327 |
Q |
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| T |
35551495 |
aatttgtcgttttaaaatcctacacggttaaactaaagttatttatatgaggtgtccgagaacttacaaga |
35551565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 328 - 449
Target Start/End: Complemental strand, 9180157 - 9180036
Alignment:
| Q |
328 |
ggcaaaagttttggtgcataagtccttcccttatgcaccctacataagctcttttcaaccttcagattggttttacacgtgtaataatctcagctcacac |
427 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9180157 |
ggcaaaagttatggtgcataagtccttcccttatgcaccctgcataagctcttttcaaccttcagattggttttacacgtgtaataatctcagctcacac |
9180058 |
T |
|
| Q |
428 |
tctccttcacatctcatactct |
449 |
Q |
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|||||||||||||||||||||| |
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| T |
9180057 |
tctccttcacatctcatactct |
9180036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 110; Significance: 3e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 328 - 449
Target Start/End: Original strand, 3925578 - 3925699
Alignment:
| Q |
328 |
ggcaaaagttttggtgcataagtccttcccttatgcaccctacataagctcttttcaaccttcagattggttttacacgtgtaataatctcagctcacac |
427 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3925578 |
ggcaaaagttatggtgcataagtccttcccttatgcaccctgcataagctcttttcaaccttcagattggttttacacgtgtaataatctcggctcacac |
3925677 |
T |
|
| Q |
428 |
tctccttcacatctcatactct |
449 |
Q |
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|||||||||||||||||||||| |
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| T |
3925678 |
tctccttcacatctcatactct |
3925699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 328 - 416
Target Start/End: Complemental strand, 36637003 - 36636915
Alignment:
| Q |
328 |
ggcaaaagttttggtgcataagtccttcccttatgcaccctacataagctcttttcaaccttcagattggttttacacgtgtaataatc |
416 |
Q |
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|||||||||| | |||||||||| || |||||| ||||||||||| | ||| ||||| ||||||| |||||||||||||||||||| |
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| T |
36637003 |
ggcaaaagttattatgcataagtcattttcttatgtaccctacataaacacttcacaaccatcagatttgttttacacgtgtaataatc |
36636915 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 333 - 449
Target Start/End: Original strand, 54751602 - 54751718
Alignment:
| Q |
333 |
aagttttggtgcataagtccttcccttatgcaccctacataagctcttttcaaccttcagattggttttacacgtgtaataatctcagctcacactctcc |
432 |
Q |
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||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54751602 |
aagttatggtgcataagtgcttcccttatgcaccctgcataagctcttttcaaccttcagattggttttacacgtgtaataatctcagctcacactctcc |
54751701 |
T |
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| Q |
433 |
ttcacatctcatactct |
449 |
Q |
| |
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||||||||||||||||| |
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| T |
54751702 |
ttcacatctcatactct |
54751718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 327 - 395
Target Start/End: Original strand, 55765480 - 55765548
Alignment:
| Q |
327 |
aggcaaaagttttggtgcataagtccttcccttatgcaccctacataagctcttttcaaccttcagatt |
395 |
Q |
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||||||||||| ||||||||||||| || ||||||||||| | ||||| | | || ||||| ||||||| |
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| T |
55765480 |
aggcaaaagttatggtgcataagtcatttccttatgcaccgtgcataaacacattacaaccatcagatt |
55765548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 333 - 447
Target Start/End: Complemental strand, 30411141 - 30411027
Alignment:
| Q |
333 |
aagttttggtgcataagtccttcccttatgcaccctacataagctcttttcaaccttcagattggttttacacgtgtaataatctcagctcacactctcc |
432 |
Q |
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||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30411141 |
aagttatggtgcataagggtttcccttatgcaccctgcataagctcttttcaaccttcagattggttttacacgtgtaataatctcagctcacactctcc |
30411042 |
T |
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| Q |
433 |
ttcacatctcatact |
447 |
Q |
| |
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||||||||||||||| |
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| T |
30411041 |
ttcacatctcatact |
30411027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 416
Target Start/End: Original strand, 33868155 - 33868243
Alignment:
| Q |
328 |
ggcaaaagttttggtgcataagtccttcccttatgcaccctacataagctcttttcaaccttcagattggttttacacgtgtaataatc |
416 |
Q |
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|||||||||| | |||||||||| || ||||||||||||| ||||| | ||| ||||| || |||| ||||||| ||||||||||| |
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| T |
33868155 |
ggcaaaagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaaccatctgatttattttacatgtgtaataatc |
33868243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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