View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13288_low_8 (Length: 446)
Name: NF13288_low_8
Description: NF13288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13288_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Complemental strand, 26165417 - 26164989
Alignment:
| Q |
1 |
atataatgcacttctaaggtaaatcagatgttgttatcatcattaaagggaagatgtcattatttgacatatagttcaatttaatttaatataattacaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
26165417 |
atataatgcacttctaaggtaaatcagatgttgttatcatcattaaagggaagatgtcatcatttgacatatagttcaatttaatttaatgcaattacat |
26165318 |
T |
|
| Q |
101 |
aacccagaccaaaaatgattaaataactacataagttaaaagtaacaccacaaagttatgagtaacgggctagttgaacaataaacatagaaaaacaaaa |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26165317 |
aacccagaccaaaaatgattaaatgactacataagttaaaagtaacaccacaaagttatgagtaacgggctagttgaacaataaacatagaaaaacaaaa |
26165218 |
T |
|
| Q |
201 |
tgcaatcggggtcttgtgctcaatgtaactaaaacttaaacacatgattagaaaaacaaaagttccttgaagttgcacatctttggttgcagctaattgc |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26165217 |
tgcaatcggggtcttgtgctcaatgtaactaaaatttaaacacatgattagaaaaacaaaagttccttgaagttgcacatctttggttgcagctaattgc |
26165118 |
T |
|
| Q |
301 |
acaactacattaccatgac-ttagcaccctacaggaaaacatttatagtttagttttcaatttatttgtcacaagcttgaaaaaagtttataatttttag |
399 |
Q |
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|
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26165117 |
acaactacattaccacgactttagcaccctacaggaaaacatttatagtttagttttcaatttatttgtcacaagcttgaaaaaagtttataatttttag |
26165018 |
T |
|
| Q |
400 |
caacaaagaaaaagtataaagggccaaaa |
428 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
26165017 |
caacaaagaaaaagtataaagggccaaaa |
26164989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 2 - 143
Target Start/End: Complemental strand, 14939509 - 14939369
Alignment:
| Q |
2 |
tataatgcacttctaaggtaaatcagatgttgttatcatcattaaagggaagatgtcattatttgacatatagttcaatttaatttaatataattacaaa |
101 |
Q |
| |
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|||||||||||| | || ||||||||| |||| ||||||| ||| |||||||||| ||||||||||||||||||||||||| || | |||||| | |
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| T |
14939509 |
tataatgcacttgttagaaaaatcagattatgttgtcatcatcaaaataaagatgtcatcatttgacatatagttcaatttaattaaaagtcattacata |
14939410 |
T |
|
| Q |
102 |
acccagaccaaaaatgattaaataactacataagttaaaagt |
143 |
Q |
| |
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||| |||||| ||||||| ||| |||||||| |||| |||| |
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| T |
14939409 |
accttgaccaataatgatt-aatgactacataggttataagt |
14939369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 34988721 - 34988580
Alignment:
| Q |
1 |
atataatgcacttctaaggtaaatcagatgttgttatcatcattaaagggaagatgtcattatttgacatatagttcaatttaatttaatataattacaa |
100 |
Q |
| |
|
||||||||||||| | || ||||||||| |||| ||||||| ||| |||||||||| |||||||||||||||||||||||||||| | |||||| |
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| T |
34988721 |
atataatgcacttgttagaaaaatcagattatgttgtcatcatcaaaataaagatgtcatcatttgacatatagttcaatttaatttaaagtcattacat |
34988622 |
T |
|
| Q |
101 |
aacccagaccaaaaatgattaaataactacataagttaaaagt |
143 |
Q |
| |
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|||| |||||| ||||||| ||| |||||||| |||| |||| |
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|
| T |
34988621 |
aaccttgaccaataatgatt-aatgactacataggttataagt |
34988580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 66 - 138
Target Start/End: Complemental strand, 38990771 - 38990699
Alignment:
| Q |
66 |
gacatatagttcaatttaatttaatataattacaaaacccagaccaaaaatgattaaataactacataagtta |
138 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||| ||| || ||||||||||||||||||||||||| |
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| T |
38990771 |
gacatatagttcaatttaatttaaagcaattacataaccctgactaataatgattaaataactacataagtta |
38990699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 1058368 - 1058455
Alignment:
| Q |
55 |
tgtcattatttgacatatagttcaatttaatttaatataattacaaaacccagaccaaaaatgattaaataactacataagttaaaagt |
143 |
Q |
| |
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|||||| |||||||||||||||||||||||||||| || ||| || ||||| || ||| ||||||| ||| |||||||| |||| |||| |
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|
| T |
1058368 |
tgtcatcatttgacatatagttcaatttaatttaaaatcattgcataaccctgatcaataatgatt-aatgactacatatgttataagt |
1058455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 55 - 122
Target Start/End: Complemental strand, 34030345 - 34030278
Alignment:
| Q |
55 |
tgtcattatttgacatatagttcaatttaatttaatataattacaaaacccagaccaaaaatgattaa |
122 |
Q |
| |
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|||||| |||||||||||||||||||||||||||| || ||| || ||||| || ||| ||||||||| |
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| T |
34030345 |
tgtcatcatttgacatatagttcaatttaatttaaaatcattgcataaccctgatcaataatgattaa |
34030278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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