View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13288_low_9 (Length: 392)
Name: NF13288_low_9
Description: NF13288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13288_low_9 |
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| [»] scaffold0190 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 8 - 372
Target Start/End: Complemental strand, 39082659 - 39082295
Alignment:
| Q |
8 |
aagcataggtgttagaccaaggatgattcctccacttgacgagggttattttggaaatgcagcgatctttggtggggtaacaatgaaagtgggggagatt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39082659 |
aagcataggtgttagaccaaggatgattcctccacttgacgagggttattttggaaatgcagcgatctttggtggggtaacaatgaaagtgggggagatt |
39082560 |
T |
|
| Q |
108 |
ctggaatgtgggattggaaaagttgctttggagatgaacaagatgattatgttgcattctgatgagaaaataagggatgattatgagtattggttgagaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39082559 |
ctggaatgtgggattggaaaagttgctttggagatgaacaagatgattatgttgcgttctgatgagaaaataagggatgattatgagtgttggttgagaa |
39082460 |
T |
|
| Q |
208 |
tgccgaagttatttgaaattggtaatttggcaggtagcaattcattggcgacgagtggttctcagaggtttgatgtttatggtaatgattttggttgggg |
307 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39082459 |
tgccgaagttatttgaagttggtaatttggcaggtagcaattcattggcgacgagtagttctcagaggtttgatgtttatggtaatgattttggttgggg |
39082360 |
T |
|
| Q |
308 |
gaagccggtaggggttcgaagtgggggttcaaataaaagtaatgggaagattactgtgtatgctg |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39082359 |
gaagccggtaggggttcgaagtgggggttcaaataaaagtaatgggaagattactgtgtatgctg |
39082295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 12 - 372
Target Start/End: Complemental strand, 39088309 - 39087949
Alignment:
| Q |
12 |
ataggtgttagaccaaggatgattcctccacttgacgagggttattttggaaatgcagcgatctttggtggggtaacaatgaaagtgggggagattctgg |
111 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||| ||||| | ||||||||||||| ||||||||||||| |
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|
| T |
39088309 |
ataggtgttagaccaaggatgactcctccacttgacgaggattattttggaaatgcagggatcattggtagtgtaacaatgaaagcaggggagattctgg |
39088210 |
T |
|
| Q |
112 |
aatgtgggattggaaaagttgctttggagatgaacaagatgattatgttgcattctgatgagaaaataagggatgattatgagtattggttgagaatgcc |
211 |
Q |
| |
|
|||||||||| |||||| | | |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||| |||||| |
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|
| T |
39088209 |
aatgtgggataggaaaatgttcattggagatgaacaagatgattatgttacgttctgatgagaaaataagggatgattatgagtgttggttgaaaatgcc |
39088110 |
T |
|
| Q |
212 |
gaagttatttgaaattggtaatttggcaggtagcaattcattggcgacgagtggttctcagaggtttgatgtttatggtaatgattttggttgggggaag |
311 |
Q |
| |
|
||||| |||| ||| || |||||||||| ||||||||||| |||||| |||||| |||||||||||||||| |||||||||||||||||||||| |
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|
| T |
39088109 |
aaagttgtttgggattaatagtttggcaggtgctaattcattggctacgagtagttctccaaggtttgatgtttatgataatgattttggttgggggaag |
39088010 |
T |
|
| Q |
312 |
ccggtaggggttcgaagtgggggttcaaataaaagtaatgggaagattactgtgtatgctg |
372 |
Q |
| |
|
|| |||||||||||||| |||||| | |||||||||||||||||||||||||||| ||||| |
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|
| T |
39088009 |
cctgtaggggttcgaagcgggggtgcgaataaaagtaatgggaagattactgtgtttgctg |
39087949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 12 - 372
Target Start/End: Complemental strand, 39091700 - 39091340
Alignment:
| Q |
12 |
ataggtgttagaccaaggatgattcctccacttgacgagggttattttggaaatgcagcgatctttggtggggtaacaatgaaagtgggggagattctgg |
111 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||| | || ||||||| ||||||||||||| ||||||||||||| |
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|
| T |
39091700 |
ataggtgttagaccaaggatgattcctccgcttgaggaggattattttggaaatgcttcaatgattggtggtgtaacaatgaaagcaggggagattctgg |
39091601 |
T |
|
| Q |
112 |
aatgtgggattggaaaagttgctttggagatgaacaagatgattatgttgcattctgatgagaaaataagggatgattatgagtattggttgagaatgcc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||| | ||||||| ||||||||||||||| |
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| T |
39091600 |
aatgtgggattggaaaagttgctttggagttaaacaagatgattatgtcacattctgatgagaaaataagggattactatgagtgttggttgagaatgcc |
39091501 |
T |
|
| Q |
212 |
gaagttatttgaaattggtaatttggcaggtagcaattcattggcgacgagtggttctcagaggtttgatgtttatggtaatgattttggttgggggaag |
311 |
Q |
| |
|
|||| | |||| |||| | |||| | ||| | ||| | |||| || ||| |||||| ||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
39091500 |
gaagatttttgggattgatgttttgacgggtggtaatacgttgggaacaagtagttctccgaggtttgatgtttacggtaatgattttggttgggggaag |
39091401 |
T |
|
| Q |
312 |
ccggtaggggttcgaagtgggggttcaaataaaagtaatgggaagattactgtgtatgctg |
372 |
Q |
| |
|
|| || |||||| || | || ||| | ||||| | |||||| |||||||| |||| ||||| |
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|
| T |
39091400 |
cctgtgggggttagatgcggaggtgcgaataagaataatggaaagattaccgtgtttgctg |
39091340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 90 - 332
Target Start/End: Complemental strand, 39071173 - 39070931
Alignment:
| Q |
90 |
atgaaagtgggggagattctggaatgtgggattggaaaagttgctttggagatgaacaagatgattatgttgcattctgatgagaaaataagggatgatt |
189 |
Q |
| |
|
|||||||| |||||| |||| || |||| || |||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||| | ||| |
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|
| T |
39071173 |
atgaaagtcggggaggttctagagtgtgaaatcggaaaagttgctttggagataaacaagatgattttgttacattctgatgagaaaataaggaaccatt |
39071074 |
T |
|
| Q |
190 |
atgagtattggttgagaatgccgaagttatttgaaattggtaatttggcaggtagcaattcattggcgacgagtggttctcagaggtttgatgtttatgg |
289 |
Q |
| |
|
| |||| ||||||||||| | | ||| || ||| ||||| || | |||| | ||| ||||| | || |||||| |||||||||||||| ||| |
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|
| T |
39071073 |
acgagtcttggttgagaacacgcaggttgttccaaagtggtagttcgctaggtggtaataagttggcaatcagcagttctccgaggtttgatgtttttgg |
39070974 |
T |
|
| Q |
290 |
taatgattttggttgggggaagccggtaggggttcgaagtggg |
332 |
Q |
| |
|
||||||||||| ||||| ||||| || | ||||||||||||| |
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|
| T |
39070973 |
caatgattttggctggggaaagccagtggcggttcgaagtggg |
39070931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 252 - 352
Target Start/End: Complemental strand, 39097746 - 39097646
Alignment:
| Q |
252 |
ttggcgacgagtggttctcagaggtttgatgtttatggtaatgattttggttgggggaagccggtaggggttcgaagtgggggttcaaataaaagtaatg |
351 |
Q |
| |
|
||||| || ||| |||||| ||||||||||||||||||||||| ||||||||||| ||||| || | ||| ||||||||||| ||||||||||| ||| |
|
|
| T |
39097746 |
ttggcaactagtagttctccaaggtttgatgtttatggtaatgactttggttggggtaagcctgttgctgttagaagtgggggtgcaaataaaagtgatg |
39097647 |
T |
|
| Q |
352 |
g |
352 |
Q |
| |
|
| |
|
|
| T |
39097646 |
g |
39097646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 265 - 313
Target Start/End: Complemental strand, 7615289 - 7615241
Alignment:
| Q |
265 |
gttctcagaggtttgatgtttatggtaatgattttggttgggggaagcc |
313 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7615289 |
gttctccgtggtttgatgtttatggtaatgattttggttggggaaagcc |
7615241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 274 - 313
Target Start/End: Complemental strand, 7637094 - 7637055
Alignment:
| Q |
274 |
ggtttgatgtttatggtaatgattttggttgggggaagcc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
7637094 |
ggtttgatgtttatggtaatgattttggatggggaaagcc |
7637055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 313
Target Start/End: Original strand, 7656227 - 7656265
Alignment:
| Q |
275 |
gtttgatgtttatggtaatgattttggttgggggaagcc |
313 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
7656227 |
gtttgatgtttatggtaatgattttggatggggaaagcc |
7656265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0190 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: scaffold0190
Description:
Target: scaffold0190; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 274 - 370
Target Start/End: Complemental strand, 4492 - 4396
Alignment:
| Q |
274 |
ggtttgatgtttatggtaatgattttggttgggggaagccggtaggggttcgaagtgggggttcaaataaaagtaatgggaagattactgtgtatgc |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || || || ||||||||||||||||||||||||||||| ||||| |||||| ||||||||| |
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|
| T |
4492 |
ggtttgatgtttatggtaatgattttggttggggaaaacctgtgggggttcgaagtgggggttcaaataaaagaaatggaaagatttatgtgtatgc |
4396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0190; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 4630 - 4589
Alignment:
| Q |
133 |
ctttggagatgaacaagatgattatgttgcattctgatgaga |
174 |
Q |
| |
|
||||||||||||||||||||||| | ||||| |||||||||| |
|
|
| T |
4630 |
ctttggagatgaacaagatgattgttttgcactctgatgaga |
4589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 274 - 344
Target Start/End: Original strand, 15745030 - 15745100
Alignment:
| Q |
274 |
ggtttgatgtttatggtaatgattttggttgggggaagccggtaggggttcgaagtgggggttcaaataaa |
344 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| || || || |||||||||| ||||||| |||||||| |
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|
| T |
15745030 |
ggtttgatgtttatggcaatgattttggttggggaaaacctgtgggggttcgaactgggggtgcaaataaa |
15745100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 372
Target Start/End: Original strand, 15196291 - 15196341
Alignment:
| Q |
322 |
ttcgaagtgggggttcaaataaaagtaatgggaagattactgtgtatgctg |
372 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||| ||||| ||||| |
|
|
| T |
15196291 |
ttcgaagtggtagttcaaataaaagtaatggaaagattagtgtgtttgctg |
15196341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 15744880 - 15744933
Alignment:
| Q |
121 |
ttggaaaagttgctttggagatgaacaagatgattatgttgcattctgatgaga |
174 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
15744880 |
ttggtaaaggtgctttggagatgaacaagatgattgctttgcaatctgatgaga |
15744933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 265 - 318
Target Start/End: Original strand, 8936172 - 8936225
Alignment:
| Q |
265 |
gttctcagaggtttgatgtttatggtaatgattttggttgggggaagccggtag |
318 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||| ||||| ||||| |||| |
|
|
| T |
8936172 |
gttctccgtggtttgatgtttatggtaatgattttggatggggaaagcctgtag |
8936225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 307
Target Start/End: Original strand, 40147454 - 40147487
Alignment:
| Q |
274 |
ggtttgatgtttatggtaatgattttggttgggg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
40147454 |
ggtttgatgtttatggtaatgattttggatgggg |
40147487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 310
Target Start/End: Complemental strand, 6500529 - 6500493
Alignment:
| Q |
274 |
ggtttgatgtttatggtaatgattttggttgggggaa |
310 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
6500529 |
ggtttgatatttatggtaatgattttggatgggggaa |
6500493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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