View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13289_high_1 (Length: 705)
Name: NF13289_high_1
Description: NF13289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13289_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 12 - 289
Target Start/End: Complemental strand, 9283368 - 9283091
Alignment:
| Q |
12 |
tcatcatctcacaggcacatacatatccatgttatgttcagatgactcaaaaaagagccaataatattacatttgagccggcagtgtgaggctcattgag |
111 |
Q |
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| T |
9283368 |
tcatcatctcacaggcacatacatatccatgttatgttcagatgactcaaaaaagagccattaatattatatttgagccggcagtttgaggctcattgag |
9283269 |
T |
|
| Q |
112 |
aagttggcttgctggttcagcagtagaattaggcatcaccattgaaacaattgtgatcgaagcgtactgatcaaaattgatatcctcttaggaacatttg |
211 |
Q |
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||||||||||||||||||| || |||||||||| |||||||||||||| ||||||||||||||||| || ||||||||||||| |||||||||||||||| |
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| T |
9283268 |
aagttggcttgctggttcaacaatagaattaggtatcaccattgaaactattgtgatcgaagcgtattggtcaaaattgatatgctcttaggaacatttg |
9283169 |
T |
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| Q |
212 |
ctaacttacattcctctgccaaataaaatactcactctaccacttgtgcacatagctcattaatatcttaccataata |
289 |
Q |
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| T |
9283168 |
ctaacttacattcctctgtcaaataaaatgctcactctaccacttgtgcacatagctcattaatatcttaccataata |
9283091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 346 - 687
Target Start/End: Complemental strand, 9283082 - 9282747
Alignment:
| Q |
346 |
gtccgacgtaagttgttgtagtaataagaagatggcttttgatgttgaagtactagtgcgaacaactttatgaatattgtcccatattccagacacacac |
445 |
Q |
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| T |
9283082 |
gtccgacgtgagttgttgtagtaataagaagattgcttctgatgttgaagtagtagtgcgaacaactttatgaatattgtcccatattccagacactcac |
9282983 |
T |
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| Q |
446 |
taaacttgtgtggaaaaagggcaataaaaaattgcataccccaagtcttaatgagtggactcacnnnnnnnatttactttaggtggcacatttaggtgcc |
545 |
Q |
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| T |
9282982 |
taaacttgtgtagaaaaagggcaataaaaaattgcatgccccaagtcttcatgagtggactcactt------ttttttttcttttttacatttaggcgcc |
9282889 |
T |
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| Q |
546 |
aaataccataccaataacctgatcgtcgaatatgggatgttgcaaccaacacttccacacaaagcatgtaaacacttttatcagagtacaacctattttt |
645 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
9282888 |
aaataccataccaataacctgatcgtcgaatatgggatgttgcaaccaacatttccacacaaagcatgtaagcacttttaacagagtacaacctattttt |
9282789 |
T |
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| Q |
646 |
ctcggctttccaaaccaatttattattcgggatatgttctgg |
687 |
Q |
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| T |
9282788 |
ctcggctttccaaaccaatttattatccgggatatgttctgg |
9282747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 343 - 431
Target Start/End: Original strand, 6979881 - 6979968
Alignment:
| Q |
343 |
gaggtccgacgtaagttgttgtagtaataagaagatggcttttgatgttgaagtactagtgcgaacaactttatgaatattgtcccata |
431 |
Q |
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|||||||||||| ||||||||||||||||| |||||||||| |||||| |||||| ||||| |||||||||||||||| | |||||||| |
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| T |
6979881 |
gaggtccgacgtgagttgttgtagtaataa-aagatggcttctgatgtcgaagtagtagtgtgaacaactttatgaatgtcgtcccata |
6979968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 241 - 315
Target Start/End: Complemental strand, 22956333 - 22956259
Alignment:
| Q |
241 |
actcactctaccacttgtgcacatagctcattaatatcttaccataatataaggatcttttgctcccaaatactc |
315 |
Q |
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|||| |||||||||||||| ||||||||||||| ||||| |||| || ||||| || | |||| |||||||||| |
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| T |
22956333 |
actcgctctaccacttgtgtgcatagctcattaacatcttgccatgatttaaggttcatgtgcttccaaatactc |
22956259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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