View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13289_high_2 (Length: 579)
Name: NF13289_high_2
Description: NF13289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13289_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 270 - 559
Target Start/End: Complemental strand, 30586035 - 30585746
Alignment:
| Q |
270 |
gagaatttctttgagggctgatgaaacagctacctctgtcaagcagcgatcaaactgcagacatctttcagctttagctttggggattctgcctagtttg |
369 |
Q |
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| T |
30586035 |
gagaatttctttgagggctgatgaaacagctacctctgtcaagcagcgatcaaactgcagacatctttcagctttagctttggggagtctgcctagttta |
30585936 |
T |
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| Q |
370 |
tcgttaagtcagttacatgttgactaggccagttagttagactaaagtgatggctcaacaagggaattagttccatttgtatataagtcaacattgcctc |
469 |
Q |
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| T |
30585935 |
tcgttaaggcagttacatgttgactaggccagttagttagactaaagtgatggctcaacaagggaattagttccatttgtatataagtcaacattgcctc |
30585836 |
T |
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| Q |
470 |
tgattcctttcattctagatactaagaaacgtttttcctcatgtcttctatttcttctctaatagtgtaaaaagccaaacataatcctac |
559 |
Q |
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| T |
30585835 |
tgattcctttcattctagatactaagaaacatttttcctcatgtcttctatttcttctctaaaagtgtaaaaagccaaacataatcctac |
30585746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 30586999 - 30586772
Alignment:
| Q |
1 |
agaaatcttgataagcggtatggtacagaagaaaaattctcagtatgctattattcttgattacaaaaagtggaaataccgagcgttagcatctgccacc |
100 |
Q |
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| T |
30586999 |
agaaatcttgataagcggtatggtacagaagaaaaattctcagtatgctattattcttgattacaaaaagtggaaataccgagtgttagcatctgccacc |
30586900 |
T |
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| Q |
101 |
tgcaaattgcagtggctcacctacttctcataagattcacagatagcttgcaccaagcctgttgtatcgtactgtgacagccaatcagccaaagtgcttt |
200 |
Q |
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| T |
30586899 |
ggcaaattgcagtggctcacctacttctcataagattcacagatagcttgcaccaagcctgttgtatcgtactgtgacagccaatgagccaaagttgttt |
30586800 |
T |
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| Q |
201 |
acatatagcaacaaatcatgtatttcat |
228 |
Q |
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| T |
30586799 |
acatatagcaacaaatcatgtatttcat |
30586772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 21807088 - 21807035
Alignment:
| Q |
190 |
caaagtgctttacatatagcaacaaatcatgtatttcatgagagaaccaaacac |
243 |
Q |
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| T |
21807088 |
caaagtgctttgcatatagcagcaaatcctgtgtttcatgaaagaacaaaacac |
21807035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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