View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13289_high_5 (Length: 247)
Name: NF13289_high_5
Description: NF13289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13289_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 11 - 229
Target Start/End: Original strand, 9075545 - 9075763
Alignment:
| Q |
11 |
cacagacaaatctaaacaggaacagcttatgattaaaactgaacaacatctgaaaaatttaaaacaagtacttaatttacccgatcatccacgtcagcaa |
110 |
Q |
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| T |
9075545 |
cacacacaaatctaaacaggaacagcttatgattaaaattaaactacattagaataatttaaaacaagaacttaatttacccgattatccacgtcagcaa |
9075644 |
T |
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| Q |
111 |
gaacgtcacagacaaaccatgagaagatttttctctataatttgtgattaattgaggtatctcagcaatcatccaaacaatgacactaataacacctaat |
210 |
Q |
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| T |
9075645 |
gaacgtcacagacaaaccatgagaagatttttctctataatttgtgattaattgaggtatctcagcaatcatccaaacaatgacactaataacacctaat |
9075744 |
T |
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| Q |
211 |
gtaatagaagctgtctttg |
229 |
Q |
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| T |
9075745 |
gtaatagaagctgtctttg |
9075763 |
T |
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