View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13289_low_3 (Length: 556)
Name: NF13289_low_3
Description: NF13289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13289_low_3 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 477; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 4 - 540
Target Start/End: Complemental strand, 9282728 - 9282192
Alignment:
| Q |
4 |
agcataggttatgtcgtggtttcaactctcacacgaaatatcgattaggctatttatagaagattacaaacataatgtgccgatagaatatttccatcga |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
9282728 |
agcataggttatgtcgtggtttcaactctcacacgaaatatcgattaggctatttatagaagattacaaacataatgcgtcgatagaatatttccatcga |
9282629 |
T |
|
| Q |
104 |
tatgacatccactcaaaggccatggttcatcaaggatgggaatagaattttctggcccgatgcaccacctataacaataaatcgagctcgcaagatactc |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9282628 |
tatgacatccactcaaaggccatggttcatcaaggatgggaatagaattttctggcccgatgcaccacctataacaataaatcgagctcgcaagatactc |
9282529 |
T |
|
| Q |
204 |
tgccacaaaaaatttggattgttacctaggttggccataagataactctaagtggggaactaccgagctttaaattaaataaccaggaaaccaaagaatt |
303 |
Q |
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| T |
9282528 |
taccacacaaattttggattgttacctaggttggtcgtaagataactctaagtggggaactaccgagctttaaattaaataaccaggaaaccaaagaatt |
9282429 |
T |
|
| Q |
304 |
tggatcggtttgaaactttaagccttgttgcctagcgttgccaaattgaaaatagtaaggtccgtgaaacctataccaacataatttttatgcatcaaca |
403 |
Q |
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|||||| ||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
9282428 |
tggatcagtttgaatctttatgccttgttgcctagcgttgccaaattgaaagtagtaaggtccgtgaaacctataccaacataatttttatgcatcgaca |
9282329 |
T |
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| Q |
404 |
acttttgcgaagacatccaatgaataacactattgtttgaaccaccggaaccccaccaaattgagttcatcatcttctcaatagtattgataagagaggt |
503 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9282328 |
acttttccgaagacatccaatgaataacactattgtttgaaccaccgtaaccccaccaaattgagttcatcatcttctcaatagtattgataagagaggt |
9282229 |
T |
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| Q |
504 |
aggaaggagaaaaatgctcataacctaagaagggatg |
540 |
Q |
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| T |
9282228 |
aggaaggagaaaaatgctcataacctaagacgggatg |
9282192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 489
Target Start/End: Original strand, 43219615 - 43219721
Alignment:
| Q |
383 |
cataatttttatgcatcaacaacttttgcgaagacatccaatgaataacactattgtttgaaccaccggaaccccaccaaattgagttcatcatcttctc |
482 |
Q |
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||||||||||||||| | |||||| | | ||||||||||||| ||||| | || |||| ||| ||| ||||||||| | ||||||||||||||| || |
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| T |
43219615 |
cataatttttatgcactagcaacttctcccaagacatccaatggataacccggttatttggacctccgtgaccccaccagaatgagttcatcatcttttc |
43219714 |
T |
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| Q |
483 |
aatagta |
489 |
Q |
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||||||| |
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| T |
43219715 |
aatagta |
43219721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 487
Target Start/End: Complemental strand, 22187374 - 22187341
Alignment:
| Q |
454 |
ccccaccaaattgagttcatcatcttctcaatag |
487 |
Q |
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| T |
22187374 |
ccccaccaaaatgagttcatcatcttctcaatag |
22187341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 429
Target Start/End: Complemental strand, 9927569 - 9927508
Alignment:
| Q |
368 |
tgaaacctataccaacataatttttatgcatcaacaacttttgcgaagacatccaatgaata |
429 |
Q |
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||||||| |||||| |||| |||||||||||| ||||||||| | |||| ||||||| |||| |
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| T |
9927569 |
tgaaacccataccaccatattttttatgcatcgacaacttttcccaagaaatccaattaata |
9927508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 453 - 485
Target Start/End: Original strand, 188102 - 188134
Alignment:
| Q |
453 |
accccaccaaattgagttcatcatcttctcaat |
485 |
Q |
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| T |
188102 |
accccaccaaaatgagttcatcatcttctcaat |
188134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 453 - 485
Target Start/End: Original strand, 17244105 - 17244137
Alignment:
| Q |
453 |
accccaccaaattgagttcatcatcttctcaat |
485 |
Q |
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| T |
17244105 |
accccaccaaaatgagttcatcatcttctcaat |
17244137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 453 - 485
Target Start/End: Complemental strand, 10909033 - 10909001
Alignment:
| Q |
453 |
accccaccaaattgagttcatcatcttctcaat |
485 |
Q |
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||||||||||| ||||||||||||||||||||| |
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| T |
10909033 |
accccaccaaaatgagttcatcatcttctcaat |
10909001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 453 - 485
Target Start/End: Complemental strand, 49641122 - 49641090
Alignment:
| Q |
453 |
accccaccaaattgagttcatcatcttctcaat |
485 |
Q |
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||||||||||| ||||||||||||||||||||| |
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| T |
49641122 |
accccaccaaaatgagttcatcatcttctcaat |
49641090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 453 - 485
Target Start/End: Complemental strand, 44884797 - 44884765
Alignment:
| Q |
453 |
accccaccaaattgagttcatcatcttctcaat |
485 |
Q |
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||||||||||| ||||||||||||||||||||| |
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| T |
44884797 |
accccaccaaaatgagttcatcatcttctcaat |
44884765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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