View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1328_high_11 (Length: 271)
Name: NF1328_high_11
Description: NF1328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1328_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 22 - 144
Target Start/End: Original strand, 25904415 - 25904537
Alignment:
| Q |
22 |
taactaagtatcactctccaatacatagtccttaaaattatataaaaacaattagtagatcttaatctatatgagttaatgtttttctcaaattttaatc |
121 |
Q |
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| T |
25904415 |
taactaagtatcactctccaatacatagtccttaaaattatataaaaacaattagtagatcgtaatctatatgaattaatgtttttctcaaattttaatc |
25904514 |
T |
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| Q |
122 |
gtccaactcttgcaagtttgaga |
144 |
Q |
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| T |
25904515 |
gtccaactcttgcaagtttgaga |
25904537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 25906598 - 25906677
Alignment:
| Q |
143 |
gactgggttgttcaggtgagtcttttgcttctgtttcttgtcttggtgaaagtcttgaggatttgaggtgggggtattgg |
222 |
Q |
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| T |
25906598 |
gactgggttgttcaggtgagtcttttgcttctgtttcttgtcttggtgaaagtcttaaggatttgaggtgggggtattgg |
25906677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 40426631 - 40426558
Alignment:
| Q |
22 |
taactaagtatcactctccaatacatagtccttaaaattatataaaaacaattagtagatcttaatctatatga |
95 |
Q |
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| T |
40426631 |
taactaagtatcactctcctgtacttagtccttaaaagtatataaaaacaattagtagatcttaatctatatga |
40426558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 40424341 - 40424263
Alignment:
| Q |
143 |
gactgggttgttcaggtgagtcttttgcttctgtttcttgtcttggtgaaagtcttgaggatttgaggtgggggtattgg |
222 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||| | | ||||||| ||| ||||||||||||||||||| |
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| T |
40424341 |
gactgggttgttcaggtgagtcttt-gcttctgtttcttgtcttagagcaagtcttaaggctttgaggtgggggtattgg |
40424263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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