View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1328_high_13 (Length: 262)

Name: NF1328_high_13
Description: NF1328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1328_high_13
NF1328_high_13
[»] chr2 (21 HSPs)
chr2 (41-262)||(1592974-1593195)
chr2 (41-262)||(36314457-36314679)
chr2 (41-262)||(10585052-10585272)
chr2 (41-209)||(5382568-5382740)
chr2 (96-215)||(1043292-1043411)
chr2 (96-215)||(9190281-9190400)
chr2 (49-175)||(7494759-7494885)
chr2 (131-209)||(41732610-41732688)
chr2 (41-173)||(22333398-22333525)
chr2 (158-209)||(2096106-2096157)
chr2 (114-206)||(10412674-10412766)
chr2 (118-214)||(25280008-25280104)
chr2 (80-167)||(12563760-12563847)
chr2 (150-209)||(14160584-14160643)
chr2 (159-209)||(21613389-21613439)
chr2 (130-199)||(21278626-21278695)
chr2 (147-209)||(9754043-9754104)
chr2 (156-212)||(35524941-35524997)
chr2 (157-212)||(8230405-8230460)
chr2 (150-209)||(14950623-14950682)
chr2 (118-209)||(19590884-19590976)
[»] chr6 (11 HSPs)
chr6 (41-262)||(3886091-3886312)
chr6 (42-262)||(583203-583423)
chr6 (41-215)||(29363788-29363962)
chr6 (41-214)||(34729504-34729677)
chr6 (114-215)||(30386778-30386879)
chr6 (131-209)||(13703078-13703156)
chr6 (131-209)||(7590494-7590572)
chr6 (118-207)||(7639618-7639707)
chr6 (131-203)||(5122288-5122360)
chr6 (156-212)||(8560121-8560177)
chr6 (161-212)||(33224566-33224617)
[»] scaffold0049 (2 HSPs)
scaffold0049 (41-262)||(46825-47046)
scaffold0049 (41-215)||(15000-15174)
[»] chr8 (10 HSPs)
chr8 (41-262)||(18605969-18606190)
chr8 (41-215)||(21441837-21442011)
chr8 (41-215)||(41323425-41323599)
chr8 (41-215)||(4072471-4072645)
chr8 (133-214)||(10713850-10713931)
chr8 (147-210)||(30932154-30932217)
chr8 (162-209)||(33538390-33538437)
chr8 (158-212)||(1233786-1233840)
chr8 (158-212)||(13641142-13641196)
chr8 (158-212)||(13741554-13741608)
[»] chr7 (26 HSPs)
chr7 (41-215)||(45809883-45810057)
chr7 (41-215)||(83861-84035)
chr7 (41-215)||(46211920-46212094)
chr7 (41-215)||(48609349-48609523)
chr7 (93-209)||(2826751-2826867)
chr7 (130-209)||(758575-758654)
chr7 (41-180)||(39719643-39719782)
chr7 (147-214)||(2410950-2411017)
chr7 (131-201)||(27098887-27098957)
chr7 (131-201)||(27179346-27179416)
chr7 (131-209)||(23333303-23333381)
chr7 (161-209)||(27571631-27571679)
chr7 (132-203)||(19532346-19532417)
chr7 (147-214)||(36558346-36558413)
chr7 (133-199)||(5437147-5437213)
chr7 (159-209)||(41532415-41532465)
chr7 (131-208)||(33036082-33036159)
chr7 (158-209)||(33335985-33336036)
chr7 (133-199)||(11468614-11468680)
chr7 (171-215)||(39719308-39719352)
chr7 (161-214)||(37205809-37205862)
chr7 (156-209)||(45855389-45855442)
chr7 (156-212)||(40253872-40253928)
chr7 (131-209)||(38892149-38892226)
chr7 (172-209)||(31174510-31174547)
chr7 (41-117)||(758656-758732)
[»] chr4 (23 HSPs)
chr4 (41-262)||(46721821-46722041)
chr4 (41-215)||(13768526-13768700)
chr4 (93-218)||(32824561-32824686)
chr4 (41-208)||(43892766-43892933)
chr4 (131-214)||(20618755-20618838)
chr4 (131-209)||(23237516-23237594)
chr4 (131-209)||(27512926-27513004)
chr4 (131-209)||(32595097-32595175)
chr4 (131-209)||(4608127-4608205)
chr4 (159-209)||(18493819-18493869)
chr4 (159-209)||(22375924-22375974)
chr4 (131-209)||(39606296-39606374)
chr4 (159-209)||(54508597-54508647)
chr4 (154-208)||(23609292-23609346)
chr4 (159-209)||(34021334-34021384)
chr4 (156-212)||(8762857-8762913)
chr4 (147-199)||(21733894-21733946)
chr4 (131-208)||(20167514-20167591)
chr4 (168-208)||(37927787-37927827)
chr4 (157-212)||(16608607-16608662)
chr4 (158-209)||(44222972-44223023)
chr4 (159-209)||(30226683-30226733)
chr4 (131-200)||(18502008-18502077)
[»] chr1 (19 HSPs)
chr1 (41-215)||(7493395-7493569)
chr1 (41-217)||(10619789-10619965)
chr1 (96-218)||(44429776-44429898)
chr1 (41-215)||(15757404-15757578)
chr1 (41-175)||(48770403-48770536)
chr1 (131-209)||(44592591-44592669)
chr1 (158-214)||(39618462-39618518)
chr1 (131-209)||(43410941-43411019)
chr1 (131-208)||(6764491-6764568)
chr1 (131-209)||(27773557-27773635)
chr1 (131-208)||(43022554-43022631)
chr1 (158-209)||(36156979-36157030)
chr1 (133-199)||(29681092-29681158)
chr1 (159-209)||(50099609-50099659)
chr1 (164-209)||(50303966-50304011)
chr1 (157-212)||(10989476-10989531)
chr1 (133-199)||(48366676-48366742)
chr1 (156-207)||(29357153-29357204)
chr1 (156-212)||(51550450-51550506)
[»] chr3 (16 HSPs)
chr3 (41-262)||(30342615-30342835)
chr3 (41-215)||(17653231-17653405)
chr3 (41-215)||(46823532-46823706)
chr3 (41-202)||(40285645-40285807)
chr3 (131-214)||(35238708-35238791)
chr3 (111-214)||(35734390-35734494)
chr3 (41-175)||(21295699-21295834)
chr3 (147-214)||(30500937-30501004)
chr3 (131-209)||(22775259-22775337)
chr3 (158-209)||(26769847-26769898)
chr3 (158-209)||(37057528-37057579)
chr3 (131-209)||(37224394-37224472)
chr3 (159-209)||(15871364-15871414)
chr3 (159-209)||(52724608-52724658)
chr3 (157-212)||(19795456-19795511)
chr3 (93-136)||(35734271-35734314)
[»] chr5 (13 HSPs)
chr5 (41-215)||(17769220-17769394)
chr5 (41-215)||(39685573-39685747)
chr5 (93-209)||(13517247-13517362)
chr5 (131-209)||(39570835-39570913)
chr5 (158-209)||(6735915-6735966)
chr5 (159-209)||(21360908-21360958)
chr5 (118-214)||(8403304-8403401)
chr5 (131-201)||(42580444-42580514)
chr5 (156-212)||(3498712-3498768)
chr5 (158-203)||(12947320-12947365)
chr5 (135-191)||(13734616-13734672)
chr5 (158-203)||(12933107-12933152)
chr5 (176-209)||(42092340-42092373)


Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 41 - 262
Target Start/End: Original strand, 1592974 - 1593195
Alignment:
Q  41 attatttatctcttttgggttctattctttcggatcctgtacgacatgattgaataatttaaagtttgaccggaagttaaataaagatggaaaaaattat 140  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1592974 attatttatctcttttgggttctattctttcagatcctgtacgacatgattgaataatttaaagtttgaccggaagttaaataaagatggaaaaaattat 1593073  T
Q  141 ttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatataccaactcgttcnnnnnnntatttatttttgagg 240  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||       |||||||||||||||    
T  1593074 ttcatttaaaataaaacttggggtagccaaatatatattattaggggtaactaaatataaaaatataccaactcgctcaaaaaaatatttatttttgagg 1593173  T
Q  241 tagccatggctacctcttcctt 262  Q
    ||||||||||||||||||||||    
T  1593174 tagccatggctacctcttcctt 1593195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 41 - 262
Target Start/End: Original strand, 36314457 - 36314679
Alignment:
Q  41 attatttatctcttttgggttctattctttcggatcctgtacgacatgattgaataatttaaagtttgaccggaagttaaataaagatggaaaaaattat 140  Q
    |||||||||||||||||| |  |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36314457 attatttatctcttttggatgttattctttcggatcctatacgacatgattgaataatttaaagtttgaccggaagttaaataaagatggaaaaaattat 36314556  T
Q  141 ttcatttaaaataaaa-tttggggtagccaaatatatattattaggggtagctaaatataaaaatataccaactcgttcnnnnnnntatttatttttgag 239  Q
    |||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||       ||||||||||||||    
T  36314557 ttcatttaaaataaaacttgggggtagccaaatatatattattaggggtaactaaatataaaaatatacctactcgctcaaaaaaatatttatttttgag 36314656  T
Q  240 gtagccatggctacctcttcctt 262  Q
    |||||||||||||||||||||||    
T  36314657 gtagccatggctacctcttcctt 36314679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 41 - 262
Target Start/End: Complemental strand, 10585272 - 10585052
Alignment:
Q  41 attatttatctcttttgggttctattctttcggatcctgtacgacatgattgaataatttaaagtttgaccggaagttaaataaagatggaaaaaattat 140  Q
    ||||||||||||||||||||  ||||||| ||| |||| |||||||||||| |||||||| ||||| ||||| ||| |||||||||||||||| ||||||    
T  10585272 attatttatctcttttgggtgttattcttccggttcctatacgacatgattaaataatttgaagttcgaccgaaagctaaataaagatggaaagaattat 10585173  T
Q  141 ttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatataccaactcgttcnnnnnnntatttatttttgagg 240  Q
    |||| ||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||| || ||||| ||       ||||| |||||| ||    
T  10585172 ttcacttaaaataaaatttgggatagctaaatatatattattaggggtagctaaaaataaaaatatccctactcgctc-aaaaaatatttttttttgggg 10585074  T
Q  241 tagccatggctacctcttcctt 262  Q
    ||||||||||||||||| ||||    
T  10585073 tagccatggctacctctccctt 10585052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 41 - 209
Target Start/End: Original strand, 5382568 - 5382740
Alignment:
Q  41 attatttatctcttttgggttctattctttcggatcctgtacgacatgattgaataatttaaagtttgaccggaagttaaataaagatggaaaaaattat 140  Q
    ||||||||||||||||||||  || |||||||| || | |||||||| ||  |||||||| ||||| ||||||||||||||||||||| |||||||||||    
T  5382568 attatttatctcttttgggtgttaatctttcggttcttatacgacattatcaaataatttgaagttcgaccggaagttaaataaagatagaaaaaattat 5382667  T
Q  141 ttca-tttaaaataaaattt-ggggtagccaa--atatatattattaggggtagctaaatataaaaatatacc 209  Q
    |||| |||||||| |||||| |||||||| ||  |||||||||||||||||||||||||||||||||||||||    
T  5382668 ttcactttaaaattaaatttgggggtagctaaatatatatattattaggggtagctaaatataaaaatatacc 5382740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 96 - 215
Target Start/End: Original strand, 1043292 - 1043411
Alignment:
Q  96 aatttaaagtttgaccggaagttaaataaagatggaaaaaattatttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaa 195  Q
    ||||| ||||| ||||||||||||||||||||| | ||||||||||||| ||||||| ||| |||||||||||||||| |||||||||||||||||||||    
T  1043292 aatttgaagttcgaccggaagttaaataaagatagtaaaaattatttcacttaaaattaaacttggggtagccaaataaatattattaggggtagctaaa 1043391  T
Q  196 tataaaaatataccaactcg 215  Q
    |||||||||||||| |||||    
T  1043392 tataaaaatatacctactcg 1043411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 96 - 215
Target Start/End: Original strand, 9190281 - 9190400
Alignment:
Q  96 aatttaaagtttgaccggaagttaaataaagatggaaaaaattatttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaa 195  Q
    ||||| ||||| ||||||||||||||||||||| | ||||||||||||| ||||||| ||| |||||||||||||||| |||||||||||||||||||||    
T  9190281 aatttgaagttcgaccggaagttaaataaagatagtaaaaattatttcacttaaaattaaacttggggtagccaaataaatattattaggggtagctaaa 9190380  T
Q  196 tataaaaatataccaactcg 215  Q
    |||||||||||||| |||||    
T  9190381 tataaaaatatacctactcg 9190400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 49 - 175
Target Start/End: Complemental strand, 7494885 - 7494759
Alignment:
Q  49 tctcttttgggttctattctttcggatcctgtacgacatgattgaataatttaaagtttgaccggaagttaaataaagatggaaaaaattatttcattta 148  Q
    ||||||||||||  || |||||||| |||| |||||||| ||  |||||||| ||||| ||||||||||||||||||||| ||||||||||||||| |||    
T  7494885 tctcttttgggtgttaatctttcggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaagatagaaaaaattatttcactta 7494786  T
Q  149 aaataaaatttggggtagccaaatata 175  Q
    |||| |||||||||||||| |||||||    
T  7494785 aaattaaatttggggtagctaaatata 7494759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 131 - 209
Target Start/End: Original strand, 41732610 - 41732688
Alignment:
Q  131 aaaaaattatttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatatacc 209  Q
    ||||||||||||||  ||||||  || |||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  41732610 aaaaaattatttcaactaaaatctaacttggggtagccaaatatatattattaggggtagctacatataaaaacatacc 41732688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 41 - 173
Target Start/End: Original strand, 22333398 - 22333525
Alignment:
Q  41 attatttatctcttttgggttctattctttcggatcctgtacgacatgattgaataatttaaagtttgaccggaagttaaataaagatggaaaaaattat 140  Q
    |||||||||||| |||||||  || |||| ||  |||| ||| |||| ||  |||||||| ||||||||||||||| |||||||||||||||||||||||    
T  22333398 attatttatctcctttgggtgttaatcttccgattcctttacaacattatcaaataatttgaagtttgaccggaagctaaataaagatggaaaaaattat 22333497  T
Q  141 ttcatttaaaataaaatttggggtagccaaata 173  Q
    |||     | ||||||||||||||||| |||||    
T  22333498 ttc-----acataaaatttggggtagctaaata 22333525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 158 - 209
Target Start/End: Complemental strand, 2096157 - 2096106
Alignment:
Q  158 ttggggtagccaaatatatattattaggggtagctaaatataaaaatatacc 209  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2096157 ttggggtagccaaatatatattattaggggtagctaaacataaaaatatacc 2096106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 114 - 206
Target Start/End: Complemental strand, 10412766 - 10412674
Alignment:
Q  114 aagttaaataaagatggaaaaaa-ttatttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatat 206  Q
    |||||||||||| ||| |||||| ||| |||| ||||||||||||||||| |||| |||| ||||||||||| | |||||||||||||||||||    
T  10412766 aagttaaataaacatgaaaaaaaattagttcacttaaaataaaatttggg-tagctaaatgtatattattagagatagctaaatataaaaatat 10412674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 118 - 214
Target Start/End: Complemental strand, 25280104 - 25280008
Alignment:
Q  118 taaataaagatggaaaaaattatttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatataccaactc 214  Q
    ||||||| |||||||||||  |  ||||||||||||||||||||| |||  ||||||||||||||||  ||||| ||||||||| ||||||| ||||    
T  25280104 taaataaggatggaaaaaaaaaaatcatttaaaataaaatttgggatagttaaatatatattattagaagtagccaaatataaatatatacctactc 25280008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 80 - 167
Target Start/End: Original strand, 12563760 - 12563847
Alignment:
Q  80 tacgacatgattgaataatttaaagtttgaccggaagttaaataaagatggaaaaaattatttcatttaaaataaaatttggggtagc 167  Q
    |||||||||||| | |||||| ||||| ||||||||| |||||||  ||| |||||||||||||| |||||||||||  |||||||||    
T  12563760 tacgacatgattaagtaatttgaagttcgaccggaagctaaataagaatgaaaaaaattatttcacttaaaataaaacctggggtagc 12563847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 150 - 209
Target Start/End: Original strand, 14160584 - 14160643
Alignment:
Q  150 aataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatatacc 209  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||| |||| |||||||||    
T  14160584 aataaaacttggggtagccaactatatattattaggggtagctaagtatacaaatatacc 14160643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 209
Target Start/End: Original strand, 21613389 - 21613439
Alignment:
Q  159 tggggtagccaaatatatattattaggggtagctaaatataaaaatatacc 209  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  21613389 tggggtagccaaatatatattattaggggtagccaaatataataatatacc 21613439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 130 - 199
Target Start/End: Complemental strand, 21278695 - 21278626
Alignment:
Q  130 gaaaaaattatttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatata 199  Q
    |||||||||||||||  |||||| ||| ||||||||| |||||| ||||||||||||||||| |||||||    
T  21278695 gaaaaaattatttcaactaaaatcaaacttggggtagtcaaataaatattattaggggtagccaaatata 21278626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 209
Target Start/End: Complemental strand, 9754104 - 9754043
Alignment:
Q  147 taaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatatacc 209  Q
    |||||| ||||||||| ||||||| ||||||||||||  ||||||||||||||||||||||||    
T  9754104 taaaatcaaatttggg-tagccaattatatattattaacggtagctaaatataaaaatatacc 9754043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 35524941 - 35524997
Alignment:
Q  156 atttggggtagccaaatatatattattaggggtagctaaatataaaaatataccaac 212  Q
    |||||||||||| |||||| | ||||| |||||||||||||||||||| ||||||||    
T  35524941 atttggggtagctaaatattttttatttggggtagctaaatataaaaacataccaac 35524997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 8230405 - 8230460
Alignment:
Q  157 tttggggtagccaaatatatattattaggggtagctaaatataaaaatataccaac 212  Q
    ||||||||||| |||||| | ||||| |||||||||||||||||||| ||||||||    
T  8230405 tttggggtagctaaatattttttatttggggtagctaaatataaaaacataccaac 8230460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 209
Target Start/End: Original strand, 14950623 - 14950682
Alignment:
Q  150 aataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatatacc 209  Q
    ||||||| || |||||||||| ||| ||||||||||||||||||| |||| |||||||||    
T  14950623 aataaaactttgggtagccaactatgtattattaggggtagctaagtatacaaatatacc 14950682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 209
Target Start/End: Original strand, 19590884 - 19590976
Alignment:
Q  118 taaataaagatggaaaaa-attatttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatatacc 209  Q
    ||||||| |||| ||||| |||||| || ||||||||||| ||||||||    ||| |||||||||| |||||  |||||||||| |||||||    
T  19590884 taaataaggatgaaaaaagattattccacttaaaataaaacttggggtacatgaatgtatattattaagggtaagtaaatataaatatatacc 19590976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 181; Significance: 7e-98; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 41 - 262
Target Start/End: Complemental strand, 3886312 - 3886091
Alignment:
Q  41 attatttatctcttttgggttctattctttcggatcctgtacgacatgattgaataatttaaagtttgaccggaagttaaataaagatggaaaaaattat 140  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3886312 attatttatctcttttgggtgttattctttcggatcctgtacgacatgattgaataatttaaagtttgaccggaagttaaataaagatggaaaaaattat 3886213  T
Q  141 ttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatataccaactcgttcnnnnnnntatttatttttgagg 240  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||       |||||||||||||||    
T  3886212 ttcatttaaaataaaacttggggtagccaaatatatattattaggggtagctaaatataaaaatatacctactcgctcaaaaaaatatttatttttgagg 3886113  T
Q  241 tagccatggctacctcttcctt 262  Q
    ||||||||||||||||||||||    
T  3886112 tagccatggctacctcttcctt 3886091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 42 - 262
Target Start/End: Original strand, 583203 - 583423
Alignment:
Q  42 ttatttatctcttttgggttctattctttcggatcctgtacgacatgattgaataatttaaagtttgaccggaagttaaataaagatggaaaaaattatt 141  Q
    |||||||||||||||||||  ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  583203 ttatttatctcttttgggtgttattctttcggattctgtaggacatgattgaataatttaaagtttgaccggaagttaaataaagatggaaaaaattatt 583302  T
Q  142 tcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatataccaactcgttcnnnnnnntatttatttttgaggt 241  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||       ||||||||||||||||    
T  583303 tcatttaaaataaaacttggggtaaccaaatatatattattaggggtagctaaatataaaaatatacctactcgctcaaaaaaatatttatttttgaggt 583402  T
Q  242 agccatggctacctcttcctt 262  Q
    ||||||| |||||||||||||    
T  583403 agccatgactacctcttcctt 583423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 41 - 215
Target Start/End: Original strand, 29363788 - 29363962
Alignment:
Q  41 attatttatctcttttgggttctattctttcggatcctgtacgacatgattgaataatttaaagtttgaccggaagttaaataaagatggaaaaaattat 140  Q
    ||||||||||||||||||||  || |||||||| |||| ||| |||| ||  |||||||| ||||| ||||||||||||||||||||| |||||||||||    
T  29363788 attatttatctcttttgggtgttaatctttcggttcctatacaacattatcaaataatttgaagttcgaccggaagttaaataaagatagaaaaaattat 29363887  T
Q  141 ttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatataccaactcg 215  Q
    |||| ||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||    
T  29363888 ttcacttaaaattaaatttggggtagctaaatatatattattaggagtagctaaatataaaaatatacctactcg 29363962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 41 - 214
Target Start/End: Complemental strand, 34729677 - 34729504
Alignment:
Q  41 attatttatctcttttgggttctattctttcggatcctgtacgacatgattgaataatttaaagtttgaccggaagttaaataaagatggaaaaaattat 140  Q
    |||||||||||||||| |||  || |||||||| |||| ||||| || ||  |||||||| ||||| || || ||||||||||||||| |||||||||||    
T  34729677 attatttatctctttttggtattaatctttcggttcctatacgatattatcaaataatttgaagttcgatcgaaagttaaataaagatagaaaaaattat 34729578  T
Q  141 ttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatataccaactc 214  Q
    |||| ||||||| ||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||    
T  34729577 ttcacttaaaattaaacttggggtagctaaatatatactattaggggtagctaaatataaaaatatacccactc 34729504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 114 - 215
Target Start/End: Original strand, 30386778 - 30386879
Alignment:
Q  114 aagttaaataaagatggaaaaaattatttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatataccaact 213  Q
    ||||||||||||||| ||||||| ||||||| ||||||| ||| ||| | |||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  30386778 aagttaaataaagatagaaaaaaatatttcacttaaaattaaacttgagatagctaaatatatattattaggggtagctaaatataaaaatatacctact 30386877  T
Q  214 cg 215  Q
    ||    
T  30386878 cg 30386879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 131 - 209
Target Start/End: Complemental strand, 13703156 - 13703078
Alignment:
Q  131 aaaaaattatttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatatacc 209  Q
    ||||||||||||||| |||||| ||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  13703156 aaaaaattatttcatctaaaattaaacttgaggtagctaaatatatattattaggggtagctaaatataaaaatatacc 13703078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 131 - 209
Target Start/End: Original strand, 7590494 - 7590572
Alignment:
Q  131 aaaaaattatttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatatacc 209  Q
    ||||||||||| ||| ||||||  || |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7590494 aaaaaattattacatctaaaatcgaacttggggtagccaaatatatattattaggggtagctaaacataaaaatatacc 7590572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 207
Target Start/End: Complemental strand, 7639707 - 7639618
Alignment:
Q  118 taaataaagatggaaaaaattatttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatata 207  Q
    |||||||||||| ||||||| ||  || |||||||||||||| |   | | ||||||||||||| |||| |||||||||||||| |||||    
T  7639707 taaataaagatgaaaaaaatcatcccacttaaaataaaatttagaaaaactaaatatatattataagggatagctaaatataaatatata 7639618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 203
Target Start/End: Original strand, 5122288 - 5122360
Alignment:
Q  131 aaaaaattatttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaa 203  Q
    ||||| ||||||||  ||||||  || ||||||||| |||| ||||||||||||||||| ||| |||||||||    
T  5122288 aaaaatttatttcacataaaatcgaacttggggtagtcaaaaatatattattaggggtaactatatataaaaa 5122360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 8560121 - 8560177
Alignment:
Q  156 atttggggtagccaaatatatattattaggggtagctaaatataaaaatataccaac 212  Q
    ||||||||||||  ||||| ||||||| ||||| |||||||||||| ||||||||||    
T  8560121 atttggggtagctcaatatttattatttggggtggctaaatataaatatataccaac 8560177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 212
Target Start/End: Complemental strand, 33224617 - 33224566
Alignment:
Q  161 gggtagccaaatatatattattaggggtagctaaatataaaaatataccaac 212  Q
    |||||||  ||||| ||||||| |||||||||||||||||| ||||||||||    
T  33224617 gggtagctcaatatttattatttggggtagctaaatataaatatataccaac 33224566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 41 - 262
Target Start/End: Complemental strand, 47046 - 46825
Alignment:
Q  41 attatttatctcttttgggttctattctttcggatcctgtacgacatgattgaataatttaaagtttgaccggaagttaaataaagatggaaaaaattat 140  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47046 attatttatctcttttgggtgttattctttcggatcctgtacgacatgattgaataatttaaagtttgaccggaagttaaataaagatggaaaaaattat 46947  T
Q  141 ttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatataccaactcgttcnnnnnnntatttatttttgagg 240  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||       |||||||||||||||    
T  46946 ttcatttaaaataaaacttggggtagccaaatatatattattaggggtagctaaatataaaaatatacctactcactcaaaaaaatatttatttttgagg 46847  T
Q  241 tagccatggctacctcttcctt 262  Q
    ||||||||||||||||||||||    
T  46846 tagccatggctacctcttcctt 46825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 41 - 215
Target Start/End: Complemental strand, 15174 - 15000
Alignment:
Q  41 attatttatctcttttgggttctattctttcggatcctgtacgacatgattgaataatttaaagtttgaccggaagttaaataaagatggaaaaaattat 140  Q
    ||||||||||||||| ||||  || |||||||| |||| |||||||| ||  ||||||| |||||| ||||||||||||||||||||| |||||||||||    
T  15174 attatttatctctttcgggtgttaatctttcggttcctatacgacattatcaaataattaaaagttcgaccggaagttaaataaagatagaaaaaattat 15075  T
Q  141 ttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatataccaactcg 215  Q
    |||| ||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||    
T  15074 ttcacttaaaattaaatttggggtagctaaatatatattattaggggtagctaattataaaaatatacctactcg 15000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 169; Significance: 1e-90; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 41 - 262
Target Start/End: Complemental strand, 18606190 - 18605969
Alignment:
Q  41 attatttatctcttttgggttctattctttcggatcctgtacgacatgattgaataatttaaagtttgaccggaagttaaataaagatggaaaaaattat 140  Q
    ||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18606190 attatttatctcttttgggtgttattctttcggatcatgtacgacatgattgaataatttaaagtttgaccggaagttaaataaagatggaaaaaattat 18606091  T
Q  141 ttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatataccaactcgttcnnnnnnntatttatttttgagg 240  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||       ||||||||||||||     
T  18606090 ttcacttaaaataaaacttggggtagccaaatatatattattaggggtagctaaatataaaaatatacctactcgctcaaaaaaatatttatttttgaga 18605991  T
Q  241 tagccatggctacctcttcctt 262  Q
    ||||||||||||||||||||||    
T  18605990 tagccatggctacctcttcctt 18605969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 41 - 215
Target Start/End: Original strand, 21441837 - 21442011
Alignment:
Q  41 attatttatctcttttgggttctattctttcggatcctgtacgacatgattgaataatttaaagtttgaccggaagttaaataaagatggaaaaaattat 140  Q
    |||||||||||||||||| |  || |||||||  || | ||| |||| ||  |||||||| ||||| ||||||||||||||||||||| |||||||||||    
T  21441837 attatttatctcttttggatgttaatctttcgattcttatacaacattatcaaataatttgaagttcgaccggaagttaaataaagatagaaaaaattat 21441936  T
Q  141 ttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatataccaactcg 215  Q
    ||||| |||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  21441937 ttcatctaaaattaaacttggggtagctaaatatatattattaggggtagctaaatataaaaatatacctactcg 21442011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 41 - 215
Target Start/End: Original strand, 41323425 - 41323599
Alignment:
Q  41 attatttatctcttttgggttctattctttcggatcctgtacgacatgattgaataatttaaagtttgaccggaagttaaataaagatggaaaaaattat 140  Q
    ||||||||||||||||||||  || |||||||  || | ||| |||| ||  |||||||| ||||| |||||||| |||||||||||| |||||||||||    
T  41323425 attatttatctcttttgggtgttaatctttcgattcttatacaacattatcaaataatttgaagttcgaccggaaattaaataaagatagaaaaaattat 41323524  T
Q  141 ttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatataccaactcg 215  Q
    ||||| |||||| ||| |||||||||| || |||||||||||||||||||||||||||||||||||||| |||||    
T  41323525 ttcatctaaaattaaacttggggtagctaattatatattattaggggtagctaaatataaaaatatacctactcg 41323599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 41 - 215
Target Start/End: Original strand, 4072471 - 4072645
Alignment:
Q  41 attatttatctcttttgggttctattctttcggatcctgtacgacatgattgaataatttaaagtttgaccggaagttaaataaagatggaaaaaattat 140  Q
    ||||||||||||||||||||  || |||||||  || | ||| |||| ||  |||||||| |||||  |||| ||||||||||||||| |||||||||||    
T  4072471 attatttatctcttttgggtgttaatctttcgattcttatacaacattatcaaataatttgaagttctaccgtaagttaaataaagatagaaaaaattat 4072570  T
Q  141 ttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatataccaactcg 215  Q
    ||||| |||||| ||| |||||||||| || |||||||||||||||||||||||||||||||||||||| |||||    
T  4072571 ttcatctaaaattaaacttggggtagctaattatatattattaggggtagctaaatataaaaatatacctactcg 4072645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 133 - 214
Target Start/End: Complemental strand, 10713931 - 10713850
Alignment:
Q  133 aaaattatttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatataccaactc 214  Q
    ||||| ||||||  |||||| ||| ||||||||||||||| |||||||| |||||||| | |||||||||||||||||||||    
T  10713931 aaaataatttcacctaaaattaaacttggggtagccaaatgtatattataaggggtagtttaatataaaaatataccaactc 10713850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 30932154 - 30932217
Alignment:
Q  147 taaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatatacca 210  Q
    |||||| ||| ||||| |||||||| ||||||||||||||  |||| |||||||||||||||||    
T  30932154 taaaatcaaacttgggatagccaaacatatattattagggacagcttaatataaaaatatacca 30932217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 209
Target Start/End: Original strand, 33538390 - 33538437
Alignment:
Q  162 ggtagccaaatatatattattaggggtagctaaatataaaaatatacc 209  Q
    |||| ||||||||||||||||||| ||||||||| |||||||||||||    
T  33538390 ggtaaccaaatatatattattaggagtagctaaacataaaaatatacc 33538437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 212
Target Start/End: Original strand, 1233786 - 1233840
Alignment:
Q  158 ttggggtagccaaatatatattattaggggtagctaaatataaaaatataccaac 212  Q
    ||||||||||  ||||| ||||||| |||||||||||||||||| ||||||||||    
T  1233786 ttggggtagctcaatatttattatttggggtagctaaatataaatatataccaac 1233840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 212
Target Start/End: Original strand, 13641142 - 13641196
Alignment:
Q  158 ttggggtagccaaatatatattattaggggtagctaaatataaaaatataccaac 212  Q
    ||||||||||  ||||| ||||||| | |||||||||||||||| ||||||||||    
T  13641142 ttggggtagctcaatatttattatttgaggtagctaaatataaatatataccaac 13641196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 212
Target Start/End: Original strand, 13741554 - 13741608
Alignment:
Q  158 ttggggtagccaaatatatattattaggggtagctaaatataaaaatataccaac 212  Q
    ||||||||||  ||||| ||||||| | |||||||||||||||| ||||||||||    
T  13741554 ttggggtagctcaatatttattatttgaggtagctaaatataaatatataccaac 13741608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 119; Significance: 7e-61; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 41 - 215
Target Start/End: Original strand, 45809883 - 45810057
Alignment:
Q  41 attatttatctcttttgggttctattctttcggatcctgtacgacatgattgaataatttaaagtttgaccggaagttaaataaagatggaaaaaattat 140  Q
    ||||||||||||||||||||  || |||| ||| |||| |||||||||||| |||||||| ||||| ||||||||| |||||||||||||||||||||||    
T  45809883 attatttatctcttttgggtgttagtcttccggttcctatacgacatgattaaataatttgaagttcgaccggaagctaaataaagatggaaaaaattat 45809982  T
Q  141 ttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatataccaactcg 215  Q
    |||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  45809983 ttcacttaaaataaaacttggggtagccaaatatatattattgggggtagctaaatataaaaatatacctactcg 45810057  T

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Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 41 - 215
Target Start/End: Original strand, 83861 - 84035
Alignment:
Q  41 attatttatctcttttgggttctattctttcggatcctgtacgacatgattgaataatttaaagtttgaccggaagttaaataaagatggaaaaaattat 140  Q
    ||||||||||||||||||||  || |||||||| |||| |||||||| ||  |||||||| ||||| ||||||||||||||||||||| |||||| ||||    
T  83861 attatttatctcttttgggtgttaatctttcggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaagatagaaaaatttat 83960  T
Q  141 ttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatataccaactcg 215  Q
    |||| ||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||    
T  83961 ttcacttaaaattaaatttggggtaactaaatatatattattaggggtagctaaatataaaaatatacctactcg 84035  T

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Target: chr7; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 41 - 215
Target Start/End: Original strand, 46211920 - 46212094
Alignment:
Q  41 attatttatctcttttgggttctattctttcggatcctgtacgacatgattgaataatttaaagtttgaccggaagttaaataaagatggaaaaaattat 140  Q
    ||||||||||||||||||||  || |||||||| |||| |||||||| ||  |||||||| ||||| ||||||||||||||||||||  |||||||||||    
T  46211920 attatttatctcttttgggtgttaatctttcggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaagaaagaaaaaattat 46212019  T
Q  141 ttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatataccaactcg 215  Q
    |||| ||||||| |||||||||||||| ||||||||||||||||  ||||||||||||||||||||||| |||||    
T  46212020 ttcacttaaaattaaatttggggtagctaaatatatattattagaagtagctaaatataaaaatatacctactcg 46212094  T

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Target: chr7; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 41 - 215
Target Start/End: Original strand, 48609349 - 48609523
Alignment:
Q  41 attatttatctcttttgggttctattctttcggatcctgtacgacatgattgaataatttaaagtttgaccggaagttaaataaagatggaaaaaattat 140  Q
    |||||||||||||||| |||  || |||||||| |||| |||||||| ||  |||||||| ||||| ||||| ||||||||||||||| |||||||||||    
T  48609349 attatttatctctttttggtattaatctttcggttcctatacgacattatcaaataatttgaagttcgaccgaaagttaaataaagatagaaaaaattat 48609448  T
Q  141 ttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatataccaactcg 215  Q
    |||| ||||||| ||| |||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||    
T  48609449 ttcacttaaaattaaacttggggtagctaaatatatattattaggggtagttaaatataaaaatatacccactcg 48609523  T

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Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 93 - 209
Target Start/End: Complemental strand, 2826867 - 2826751
Alignment:
Q  93 aataatttaaagtttgaccggaagttaaataaagatggaaaaaattatttcatttaaaataaaatttggggtagccaaatatatattattaggggtagct 192  Q
    |||||||| || |||||||||||| ||| ||||||| ||||||||||||||| ||| ||| ||| |||| ||||| |||||||||||||||| | |||||    
T  2826867 aataatttgaattttgaccggaaggtaattaaagatagaaaaaattatttcacttacaattaaacttggagtagctaaatatatattattagagatagct 2826768  T
Q  193 aaatataaaaatatacc 209  Q
    |||||||||||||||||    
T  2826767 aaatataaaaatatacc 2826751  T

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Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 130 - 209
Target Start/End: Complemental strand, 758654 - 758575
Alignment:
Q  130 gaaaaaattatttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatatacc 209  Q
    ||||||||||||||| ||||||| |||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||    
T  758654 gaaaaaattatttcacttaaaattaaatttggggtagctaaatatatattattaagggtagataaatataaaaatatacc 758575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 41 - 180
Target Start/End: Complemental strand, 39719782 - 39719643
Alignment:
Q  41 attatttatctcttttgggttctattctttcggatcctgtacgacatgattgaataatttaaagtttgaccggaagttaaataaagatggaaaaaattat 140  Q
    ||||||||||||||||||||  || |||||||  || | ||| |||| ||  |||||||||||||| ||||| ||||||||||||||| |||||||||||    
T  39719782 attatttatctcttttgggtgttaatctttcgattcttatacaacattatcaaataatttaaagttcgaccgaaagttaaataaagatagaaaaaattat 39719683  T
Q  141 ttcatttaaaataaaatttggggtagccaaatatatatta 180  Q
    ||||| |||||| |||  |||| |||| ||||||||||||    
T  39719682 ttcatctaaaattaaacctgggatagctaaatatatatta 39719643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 2411017 - 2410950
Alignment:
Q  147 taaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatataccaactc 214  Q
    |||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2411017 taaaatcaaatttggagtagccaaatatatattattaggggtagcttaatataaaaatataccaactc 2410950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 131 - 201
Target Start/End: Original strand, 27098887 - 27098957
Alignment:
Q  131 aaaaaattatttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaa 201  Q
    ||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||    
T  27098887 aaaaaattattacatttaaaattaaatttgggatagccaaatatatattattaggggtagctaaacataaa 27098957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 131 - 201
Target Start/End: Complemental strand, 27179416 - 27179346
Alignment:
Q  131 aaaaaattatttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaa 201  Q
    ||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||    
T  27179416 aaaaaattattacatttaaaattaaatttgggatagccaaatatatattattaggggtagctaaacataaa 27179346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 131 - 209
Target Start/End: Original strand, 23333303 - 23333381
Alignment:
Q  131 aaaaaattatttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatatacc 209  Q
    ||||||||||| ||  ||||||  || |||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  23333303 aaaaaattattgcacctaaaatcgaacttggagtagccaaatatatattattaggggtagctaaacataaaaatatacc 23333381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 27571631 - 27571679
Alignment:
Q  161 gggtagccaaatatatattattaggggtagctaaatataaaaatatacc 209  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27571631 gggtagccaaatatatattattaggggtagctaaacataaaaatatacc 27571679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 132 - 203
Target Start/End: Original strand, 19532346 - 19532417
Alignment:
Q  132 aaaaattatttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaa 203  Q
    |||| ||||| ||| |||||| |||||||||||||||||||||||||||||| |||||||| |||| |||||    
T  19532346 aaaacttattccatctaaaatcaaatttggggtagccaaatatatattattaagggtagcttaataaaaaaa 19532417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 36558413 - 36558346
Alignment:
Q  147 taaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatataccaactc 214  Q
    |||||| ||| ||| ||||||||||||||||||||||||||||  | |||||||||||||||||||||    
T  36558413 taaaatcaaacttgaggtagccaaatatatattattaggggtaatttaatataaaaatataccaactc 36558346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 199
Target Start/End: Original strand, 5437147 - 5437213
Alignment:
Q  133 aaaattatttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatata 199  Q
    ||||||||||||  |||||| ||| |||||||||||||||||||||||| ||||||||||| |||||    
T  5437147 aaaattatttcaactaaaatcaaacttggggtagccaaatatatattatcaggggtagctatatata 5437213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 41532465 - 41532415
Alignment:
Q  159 tggggtagccaaatatatattattaggggtagctaaatataaaaatatacc 209  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  41532465 tggggtagccaaatatatattattaggggtagccaaatataataatatacc 41532415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 131 - 208
Target Start/End: Original strand, 33036082 - 33036159
Alignment:
Q  131 aaaaaattatttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatatac 208  Q
    ||||||||||| ||  ||||||  || |||||||||||||||||||||||| |||||||| |||| ||||||||||||    
T  33036082 aaaaaattattacacctaaaatcgaacttggggtagccaaatatatattatcaggggtagttaaacataaaaatatac 33036159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 209
Target Start/End: Original strand, 33335985 - 33336036
Alignment:
Q  158 ttggggtagccaaatatatattattaggggtagctaaatataaaaatatacc 209  Q
    |||||||||  ||||||||||||||||||||||||||||||||| |||||||    
T  33335985 ttggggtagttaaatatatattattaggggtagctaaatataaatatatacc 33336036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 199
Target Start/End: Complemental strand, 11468680 - 11468614
Alignment:
Q  133 aaaattatttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatata 199  Q
    ||||||||||||  |||||| ||| ||| ||||||||||||||||||||||| |||||| |||||||    
T  11468680 aaaattatttcaactaaaatcaaacttgaggtagccaaatatatattattagaggtagccaaatata 11468614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 39719352 - 39719308
Alignment:
Q  171 atatatattattaggggtagctaaatataaaaatataccaactcg 215  Q
    |||||||||||||||| |||||||||||||||||||||| |||||    
T  39719352 atatatattattagggatagctaaatataaaaatatacctactcg 39719308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 37205809 - 37205862
Alignment:
Q  161 gggtagccaaatatatattattaggggtagctaaatataaaaatataccaactc 214  Q
    ||||||||||||||||||||| |||| ||||| |||||||||||| ||| ||||    
T  37205809 gggtagccaaatatatattataagggatagcttaatataaaaataaacctactc 37205862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 45855442 - 45855389
Alignment:
Q  156 atttggggtagccaaatatatattattaggggtagctaaatataaaaatatacc 209  Q
    ||||||||||||  ||||| ||||||| |||||||||||||||||| |||||||    
T  45855442 atttggggtagctcaatatttattatttggggtagctaaatataaatatatacc 45855389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 40253872 - 40253928
Alignment:
Q  156 atttggggtagccaaatatatattattaggggtagctaaatataaaaatataccaac 212  Q
    |||||||||||| |||||| | ||||| ||| |||||||||||||||| ||||||||    
T  40253872 atttggggtagctaaatattttttatttgggatagctaaatataaaaacataccaac 40253928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 209
Target Start/End: Original strand, 38892149 - 38892226
Alignment:
Q  131 aaaaaattatttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatatacc 209  Q
    ||||||||||| ||  ||||||  || ||||||||  |||||||||||||| |||| |||||||| |||||||||||||    
T  38892149 aaaaaattattacacctaaaatcgaacttggggtaatcaaatatatattatcaggg-tagctaaacataaaaatatacc 38892226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 209
Target Start/End: Original strand, 31174510 - 31174547
Alignment:
Q  172 tatatattattaggggtagctaaatataaaaatatacc 209  Q
    ||||||||||||||| ||| ||||||||||||||||||    
T  31174510 tatatattattagggatagttaaatataaaaatatacc 31174547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 117
Target Start/End: Complemental strand, 758732 - 758656
Alignment:
Q  41 attatttatctcttttgggttctattctttcggatcctgtacgacatgattgaataatttaaagtttgaccggaagt 117  Q
    ||||||||||||||||||||  || |||||||| |||| || ||||| ||  |||||||| ||||| ||||| ||||    
T  758732 attatttatctcttttgggtgttaatctttcggttcctatatgacattatcaaataatttgaagttcgaccgaaagt 758656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 3e-57; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 41 - 262
Target Start/End: Complemental strand, 46722041 - 46721821
Alignment:
Q  41 attatttatctcttttgggttctattctttcggatcctgtacgacatgattgaataatttaaagtttgaccggaagttaaataaagatggaaaaaattat 140  Q
    ||||||||||||||||||||  ||||||| ||| |||| |||||||||||| |||||||| ||||| ||||| ||| |||||||||||||||| ||||||    
T  46722041 attatttatctcttttgggtgttattcttccggttcctatacgacatgattaaataatttgaagttcgaccgaaagctaaataaagatggaaagaattat 46721942  T
Q  141 ttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatataccaactcgttcnnnnnnntatttatttttgagg 240  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| || ||||| ||       | ||| |||||| ||    
T  46721941 ttcacttaaaataaaatttggggtagctaaatatatattattaggggtagctaaaaataaaaatatccctactcgctcaaaaaaatttttttttttg-gg 46721843  T
Q  241 tagccatggctacctcttcctt 262  Q
    ||||||||||||||||| ||||    
T  46721842 tagccatggctacctctccctt 46721821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 41 - 215
Target Start/End: Complemental strand, 13768700 - 13768526
Alignment:
Q  41 attatttatctcttttgggttctattctttcggatcctgtacgacatgattgaataatttaaagtttgaccggaagttaaataaagatggaaaaaattat 140  Q
    ||||||||||||||||||||  || |||||||| |||| |||||||| ||  |||||||| ||||| ||||||||||||||||||||| |||||||||||    
T  13768700 attatttatctcttttgggtgttaatctttcggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaagatagaaaaaattat 13768601  T
Q  141 ttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatataccaactcg 215  Q
    |||| ||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  13768600 ttcacttaaaattaaacttggggtagctaaatatatattattaggggtagctaaatataaaaatatacctactcg 13768526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 32824561 - 32824686
Alignment:
Q  93 aataatttaaagtttgaccggaagttaaataaagatggaaaaaattatttcatttaaaataaaatttggggtagccaaatatatattattaggggtagct 192  Q
    |||||||| ||||| |||||||||||||||||| ||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||| ||||||||| |    
T  32824561 aataatttgaagttcgaccggaagttaaataaaaatgaaaaaaattatttcacttaaaataaaatttgggatagccaaatatttattactaggggtagtt 32824660  T
Q  193 aaatataaaaatataccaactcgttc 218  Q
    ||||||||||||||||| ||||||||    
T  32824661 aaatataaaaatatacctactcgttc 32824686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 41 - 208
Target Start/End: Original strand, 43892766 - 43892933
Alignment:
Q  41 attatttatctcttttgggttctattctttcggatcctgtacgacatgattgaataatttaaagtttgaccggaagttaaataaagatggaaaaaattat 140  Q
    |||||||||||||||||| |  || |||||||  || | ||| |||| ||  |||||||| ||||| || |||||||||||||||||| |||||||||||    
T  43892766 attatttatctcttttggatgttaatctttcgattcttatacaacattatcaaataatttgaagttcgatcggaagttaaataaagatagaaaaaattat 43892865  T
Q  141 ttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatatac 208  Q
    ||||| |||||| ||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  43892866 ttcatctaaaattaaacttggggcagctaaatatatattattaggggtagctaaatataaaaatatac 43892933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 131 - 214
Target Start/End: Complemental strand, 20618838 - 20618755
Alignment:
Q  131 aaaaaattatttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatataccaactc 214  Q
    |||||||||||  || |||||| |||||||||||||||||| |||||||||||||||||||| |||| ||||||||||| ||||    
T  20618838 aaaaaattattctatctaaaattaaatttggggtagccaaacatatattattaggggtagcttaatacaaaaatatacctactc 20618755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 131 - 209
Target Start/End: Original strand, 23237516 - 23237594
Alignment:
Q  131 aaaaaattatttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatatacc 209  Q
    ||||||||||| ||| ||||||  || |||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  23237516 aaaaaattattacatctaaaatcgaacttggggcagccaaatatatattattaggggtagctaaacataaaaatatacc 23237594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 131 - 209
Target Start/End: Complemental strand, 27513004 - 27512926
Alignment:
Q  131 aaaaaattatttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatatacc 209  Q
    ||||||||||| ||  ||||||  || |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27513004 aaaaaattattacacctaaaatcgaacttggggtagccaaatatatattattaggggtagctaaacataaaaatatacc 27512926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 131 - 209
Target Start/End: Original strand, 32595097 - 32595175
Alignment:
Q  131 aaaaaattatttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatatacc 209  Q
    ||||||||||| ||  ||||||  || |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  32595097 aaaaaattattgcacctaaaatcgaacttggggtagccaaatatatattattaggggtagctaaacataaaaatatacc 32595175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 131 - 209
Target Start/End: Complemental strand, 4608205 - 4608127
Alignment:
Q  131 aaaaaattatttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatatacc 209  Q
    ||||||| ||| ||| ||||||  || ||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  4608205 aaaaaatgattacatctaaaatcgaacttgaggtagccaaatatatattattaggggtagctaaacataaaaatatacc 4608127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 159 - 209
Target Start/End: Original strand, 18493819 - 18493869
Alignment:
Q  159 tggggtagccaaatatatattattaggggtagctaaatataaaaatatacc 209  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  18493819 tggggtagccaaatatatattattaggggtagctaaacataaaaatatacc 18493869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 159 - 209
Target Start/End: Original strand, 22375924 - 22375974
Alignment:
Q  159 tggggtagccaaatatatattattaggggtagctaaatataaaaatatacc 209  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  22375924 tggggtagccaaatatatattattaggggtagctaaacataaaaatatacc 22375974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 131 - 209
Target Start/End: Original strand, 39606296 - 39606374
Alignment:
Q  131 aaaaaattatttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatatacc 209  Q
    ||||||||||| ||  ||||||  || ||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  39606296 aaaaaattattgcacctaaaatcgaacttgaggtagccaaatatatattattaggggtagctaaacataaaaatatacc 39606374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 159 - 209
Target Start/End: Original strand, 54508597 - 54508647
Alignment:
Q  159 tggggtagccaaatatatattattaggggtagctaaatataaaaatatacc 209  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  54508597 tggggtagccaaatatatattattaggggtagctaaacataaaaatatacc 54508647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 23609292 - 23609346
Alignment:
Q  154 aaatttggggtagccaaatatatattattaggggtagctaaatataaaaatatac 208  Q
    ||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||    
T  23609292 aaatttgggatagccaaatatatattattagggatagcaaaatataaaaatatac 23609346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 209
Target Start/End: Original strand, 34021334 - 34021384
Alignment:
Q  159 tggggtagccaaatatatattattaggggtagctaaatataaaaatatacc 209  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  34021334 tggggtagccaaatatatactattaggggtagctaaacataaaaatatacc 34021384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 8762857 - 8762913
Alignment:
Q  156 atttggggtagccaaatatatattattaggggtagctaaatataaaaatataccaac 212  Q
    |||||||||||| |||||| | ||||| |||||||||||||||||||||||||||||    
T  8762857 atttggggtagctaaatattttttatttggggtagctaaatataaaaatataccaac 8762913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 199
Target Start/End: Complemental strand, 21733946 - 21733894
Alignment:
Q  147 taaaataaaatttggggtagccaaatatatattattaggggtagctaaatata 199  Q
    |||||| ||| ||||||||||||| ||||||||||||||||||||||||||||    
T  21733946 taaaatcaaacttggggtagccaactatatattattaggggtagctaaatata 21733894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 208
Target Start/End: Complemental strand, 20167591 - 20167514
Alignment:
Q  131 aaaaaattatttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatatac 208  Q
    |||||||||||  |  |||||| ||| |||||||||||||||||||||||  || ||||||| |||||||||||||||    
T  20167591 aaaaaattattctacctaaaatcaaacttggggtagccaaatatatattaccagaggtagcttaatataaaaatatac 20167514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 37927827 - 37927787
Alignment:
Q  168 caaatatatattattaggggtagctaaatataaaaatatac 208  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  37927827 caaatatatattattatgggtagctaaatataaaaatatac 37927787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 16608607 - 16608662
Alignment:
Q  157 tttggggtagccaaatatatattattaggggtagctaaatataaaaatataccaac 212  Q
    |||||||||||  ||||| ||||||| |||||||||||||||||| ||||||||||    
T  16608607 tttggggtagctcaatatttattatttggggtagctaaatataaatatataccaac 16608662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 209
Target Start/End: Original strand, 44222972 - 44223023
Alignment:
Q  158 ttggggtagccaaatatatattattaggggtagctaaatataaaaatatacc 209  Q
    |||||| | |||||||||||||||||||||||| |||| |||||||||||||    
T  44222972 ttggggcaaccaaatatatattattaggggtagttaaacataaaaatatacc 44223023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 209
Target Start/End: Original strand, 30226683 - 30226733
Alignment:
Q  159 tggggtagccaaatatatattattaggggtagctaaatataaaaatatacc 209  Q
    ||||||| ||||||||||||||||||| ||||| |||||||| ||||||||    
T  30226683 tggggtaaccaaatatatattattaggagtagccaaatataataatatacc 30226733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 200
Target Start/End: Complemental strand, 18502077 - 18502008
Alignment:
Q  131 aaaaaattatttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataa 200  Q
    ||||||||||| ||  ||||||  || || ||||||||||||||||||||| |||||||| |||| ||||    
T  18502077 aaaaaattattacacctaaaatcgaacttagggtagccaaatatatattatcaggggtagttaaacataa 18502008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 41 - 215
Target Start/End: Complemental strand, 7493569 - 7493395
Alignment:
Q  41 attatttatctcttttgggttctattctttcggatcctgtacgacatgattgaataatttaaagtttgaccggaagttaaataaagatggaaaaaattat 140  Q
    ||||||||||||||||||||  || |||| ||| |||| |||||||||||| |||||||| ||||| ||||| ||| |||||||||||||||||||||||    
T  7493569 attatttatctcttttgggtgttagtcttccggttcctatacgacatgattaaataatttgaagttcgaccgaaagctaaataaagatggaaaaaattat 7493470  T
Q  141 ttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatataccaactcg 215  Q
    |||| ||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||    
T  7493469 ttcacttaaaataaaacttggggtagccaaatatatattattggaggtagctaaatataaaaatatacctactcg 7493395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 41 - 217
Target Start/End: Complemental strand, 10619965 - 10619789
Alignment:
Q  41 attatttatctcttttgggttctattctttcggatcctgtacgacatgattgaataatttaaagtttgaccggaagttaaataaagatggaaaaaattat 140  Q
    ||||||||||||||||||||  || |||||||  || | ||| |||| ||  |||||||| ||||  ||| ||||||||||||||||| |||||||||||    
T  10619965 attatttatctcttttgggtgttaatctttcgattcttatacaacattatcaaataatttgaagtacgactggaagttaaataaagatagaaaaaattat 10619866  T
Q  141 ttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatataccaactcgtt 217  Q
    ||||| |||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  10619865 ttcatctaaaattaaacttggggtagctaaatatatattattaggggtagctaaatataaaaatatacctactcgtt 10619789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 96 - 218
Target Start/End: Original strand, 44429776 - 44429898
Alignment:
Q  96 aatttaaagtttgaccggaagttaaataaagatggaaaaaattatttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaa 195  Q
    ||||| ||||| ||||||||||||||||||||| | ||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  44429776 aatttgaagttcgaccggaagttaaataaagatagtaaaaattatttcacttaaaattaaatttggggtagccaaataaatattattaggggtagctaaa 44429875  T
Q  196 tataaaaatataccaactcgttc 218  Q
    |||||||||||||| ||||||||    
T  44429876 tataaaaatatacctactcgttc 44429898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 41 - 215
Target Start/End: Complemental strand, 15757578 - 15757404
Alignment:
Q  41 attatttatctcttttgggttctattctttcggatcctgtacgacatgattgaataatttaaagtttgaccggaagttaaataaagatggaaaaaattat 140  Q
    ||||||||||||||||||||  || |||||||  || | ||| |||| ||  |||||||| ||||| || |||||||||||||||||| ||||| |||||    
T  15757578 attatttatctcttttgggtgttaatctttcgattcttatacaacattatcaaataatttgaagttcgatcggaagttaaataaagatagaaaatattat 15757479  T
Q  141 ttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatataccaactcg 215  Q
    ||||| |||||| ||| |||||||||  |||||||||||||||||||||| |||||||||||||||||| |||||    
T  15757478 ttcatctaaaattaaacttggggtagttaaatatatattattaggggtagataaatataaaaatatacctactcg 15757404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 41 - 175
Target Start/End: Complemental strand, 48770536 - 48770403
Alignment:
Q  41 attatttatctcttttgggttctattctttcggatcctgtacgacatgattgaataatttaaagtttgaccggaagttaaataaagatggaaaaaattat 140  Q
    ||||||||||| ||||||||  ||||||||||| |||| |||||||||||| |||||||| ||||| ||||| || | || ||||||| |||||||||||    
T  48770536 attatttatctattttgggtgttattctttcggttcctatacgacatgattaaataatttgaagttcgaccgaaactgaa-taaagatagaaaaaattat 48770438  T
Q  141 ttcatttaaaataaaatttggggtagccaaatata 175  Q
    |||| ||||||||||| |||||||||| |||||||    
T  48770437 ttcacttaaaataaaacttggggtagctaaatata 48770403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 131 - 209
Target Start/End: Complemental strand, 44592669 - 44592591
Alignment:
Q  131 aaaaaattatttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatatacc 209  Q
    ||||||||||| ||  |||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  44592669 aaaaaattattacacctaaaatcaaacttggggtagccaaatatatattattaggggtagctaaacataaaaatatacc 44592591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 39618462 - 39618518
Alignment:
Q  158 ttggggtagccaaatatatattattaggggtagctaaatataaaaatataccaactc 214  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  39618462 ttggggtagccaaatatatattattaggggtagcttaatataaaaatataccaactc 39618518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 131 - 209
Target Start/End: Complemental strand, 43411019 - 43410941
Alignment:
Q  131 aaaaaattatttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatatacc 209  Q
    ||||||||||| ||| |||||| ||| || ||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  43411019 aaaaaattattacatctaaaatcaaacttagggtaaccaaatatatattattagggatagctaaatataaaaatatacc 43410941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 131 - 208
Target Start/End: Complemental strand, 6764568 - 6764491
Alignment:
Q  131 aaaaaattatttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatatac 208  Q
    ||||||||||| ||| |||||| ||||||||| ||||||||||||||||||||| ||||||| |||| ||||||||||    
T  6764568 aaaaaattattccatctaaaattaaatttgggatagccaaatatatattattagcggtagcttaatacaaaaatatac 6764491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 131 - 209
Target Start/End: Complemental strand, 27773635 - 27773557
Alignment:
Q  131 aaaaaattatttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatatacc 209  Q
    ||||||||||| ||  ||||||  || ||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  27773635 aaaaaattattacacctaaaatcgaacttggggtaggcaaatatatattattaggggtagctaaacataaaaatatacc 27773557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 131 - 208
Target Start/End: Complemental strand, 43022631 - 43022554
Alignment:
Q  131 aaaaaattatttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatatac 208  Q
    ||||||||||| ||| ||||||  || || |||||||||||||||||||||||||||||| |||| ||||||||||||    
T  43022631 aaaaaattattacatctaaaatcgaactttgggtagccaaatatatattattaggggtagttaaacataaaaatatac 43022554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 158 - 209
Target Start/End: Original strand, 36156979 - 36157030
Alignment:
Q  158 ttggggtagccaaatatatattattaggggtagctaaatataaaaatatacc 209  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  36156979 ttggggtagccaaatatatattattaggggtagctaagcataaaaatatacc 36157030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 199
Target Start/End: Complemental strand, 29681158 - 29681092
Alignment:
Q  133 aaaattatttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatata 199  Q
    ||||||||||||  |||||| ||| |||||||||||||||||||||||| ||||||||||| |||||    
T  29681158 aaaattatttcaactaaaatcaaacttggggtagccaaatatatattatcaggggtagctatatata 29681092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 50099659 - 50099609
Alignment:
Q  159 tggggtagccaaatatatattattaggggtagctaaatataaaaatatacc 209  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  50099659 tggggtagtcaaatatatattattaggggtagctaaacataaaaatatacc 50099609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 50303966 - 50304011
Alignment:
Q  164 tagccaaatatatattattaggggtagctaaatataaaaatatacc 209  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  50303966 tagccaaatatatattattaggggtagctaaacataaaaatatacc 50304011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 10989476 - 10989531
Alignment:
Q  157 tttggggtagccaaatatatattattaggggtagctaaatataaaaatataccaac 212  Q
    ||||||||||| |||||| | ||||| |||||||||||||||||||| ||||||||    
T  10989476 tttggggtagctaaatattttttatttggggtagctaaatataaaaacataccaac 10989531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 133 - 199
Target Start/End: Original strand, 48366676 - 48366742
Alignment:
Q  133 aaaattatttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatata 199  Q
    ||||||||||||  |||||| ||| || || |||||||||||||||||| ||||||||||| |||||    
T  48366676 aaaattatttcaactaaaatcaaacttaggatagccaaatatatattatcaggggtagctatatata 48366742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 29357204 - 29357153
Alignment:
Q  156 atttggggtagccaaatatatattattaggggtagctaaatataaaaatata 207  Q
    ||||||||||||  ||||| ||||||| |||||||||||||||||| |||||    
T  29357204 atttggggtagctcaatatttattatttggggtagctaaatataaatatata 29357153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 51550450 - 51550506
Alignment:
Q  156 atttggggtagccaaatatatattattaggggtagctaaatataaaaatataccaac 212  Q
    ||||||||||||  ||||| |||||||  |||||||||||| |||| ||||||||||    
T  51550450 atttggggtagctcaatatttattattttgggtagctaaatgtaaatatataccaac 51550506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 6e-52; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 41 - 262
Target Start/End: Complemental strand, 30342835 - 30342615
Alignment:
Q  41 attatttatctcttttgggttctattctttcggatcctgtacgacatgattgaataatttaaagtttgaccggaagttaaataaagatggaaaaaattat 140  Q
    ||||||||||||||||||||  ||||||| ||  |||| |||||||||||| |||||||| ||||| ||||| ||| |||||||||||||||| ||||||    
T  30342835 attatttatctcttttgggtgttattcttccgattcctatacgacatgattaaataatttgaagttcgaccgaaagctaaataaagatggaaagaattat 30342736  T
Q  141 ttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatataccaactcgttcnnnnnnntatttatttttgagg 240  Q
    |||| |||||||||||||||||||||| |||||||||||||||| ||||| |||| |||||||||| || ||||| ||       ||||| |||||| ||    
T  30342735 ttcacttaaaataaaatttggggtagctaaatatatattattagaggtagttaaaaataaaaatatccctactcgctc-aaaaaatatttttttttgggg 30342637  T
Q  241 tagccatggctacctcttcctt 262  Q
    ||||||||||||||||| ||||    
T  30342636 tagccatggctacctctccctt 30342615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 41 - 215
Target Start/End: Original strand, 17653231 - 17653405
Alignment:
Q  41 attatttatctcttttgggttctattctttcggatcctgtacgacatgattgaataatttaaagtttgaccggaagttaaataaagatggaaaaaattat 140  Q
    |||||||||||||||| |||  || |||||||| |||| |||||||| ||  |||||||| ||||| ||||| ||||||||||||||| |||||||||||    
T  17653231 attatttatctctttttggtattaatctttcggttcctatacgacattatcaaataatttgaagttcgaccgaaagttaaataaagatagaaaaaattat 17653330  T
Q  141 ttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatataccaactcg 215  Q
    |||| ||||||| ||| |||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||    
T  17653331 ttcacttaaaattaaacttggggtagctaaatatatattattaggggtagttaaatataaaaatatacccactcg 17653405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 41 - 215
Target Start/End: Complemental strand, 46823706 - 46823532
Alignment:
Q  41 attatttatctcttttgggttctattctttcggatcctgtacgacatgattgaataatttaaagtttgaccggaagttaaataaagatggaaaaaattat 140  Q
    ||||||||||||||||||||  || |||||||  || | ||| |||| ||  |||||||| ||||| ||||||||||||||||||||| |||||||||||    
T  46823706 attatttatctcttttgggtgttaatctttcgattcttatacaacattatcaaataatttgaagttcgaccggaagttaaataaagatagaaaaaattat 46823607  T
Q  141 ttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatataccaactcg 215  Q
    ||||| |||||| ||| |||||||||| || |||||||||||||||||||||||||||||||||||||| |||||    
T  46823606 ttcatctaaaattaaacttggggtagctaattatatattattaggggtagctaaatataaaaatatacctactcg 46823532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 41 - 202
Target Start/End: Complemental strand, 40285807 - 40285645
Alignment:
Q  41 attatttatctcttttgggttctattctttcggatcctgtacgacatgattgaataatttaaagtttgaccggaagttaaataaagatggaaaaaat-ta 139  Q
    ||||||||||| ||||||||  || |||| ||| |||| || ||||||||| |||||||| ||||| ||||| ||| ||||||| ||| |||||||  ||    
T  40285807 attatttatcttttttgggtgttaatcttccggttcctatatgacatgattaaataatttgaagttcgaccgaaagctaaataatgattgaaaaaaaata 40285708  T
Q  140 tttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaa 202  Q
    ||||| ||||||| ||| ||| | |||| |||||||||||||||||| |||||||||||||||    
T  40285707 tttcacttaaaatcaaacttgagatagctaaatatatattattagggatagctaaatataaaa 40285645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 131 - 214
Target Start/End: Original strand, 35238708 - 35238791
Alignment:
Q  131 aaaaaattatttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatataccaactc 214  Q
    ||||||| | ||||| |||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  35238708 aaaaaatcaattcatctaaaattaaacttggggtagccaaatatatattattaggggtagcttaatataaaaatataccaactc 35238791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 111 - 214
Target Start/End: Original strand, 35734390 - 35734494
Alignment:
Q  111 cggaagttaaataaagatggaaaa-aattatttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatatacc 209  Q
    |||||| |||||| ||||| |||| |||||||||| |||||||||||||| ||||||| ||||| ||||||||| ||||| |||||||||||||||||||    
T  35734390 cggaagctaaatatagatgaaaaaaaattatttcacttaaaataaaatttagggtagctaaatacatattattaagggtaactaaatataaaaatatacc 35734489  T
Q  210 aactc 214  Q
     ||||    
T  35734490 tactc 35734494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 41 - 175
Target Start/End: Complemental strand, 21295834 - 21295699
Alignment:
Q  41 attatttatctcttttgggttctattctttcggatcctgtacgacatgattgaataatttaaagtttgaccggaagttaaataaa-gatggaaaaaatta 139  Q
    |||||||||||||||| |||  || |||||||  || | ||| |||| ||  |||||||| ||||| |||||||||||||||||| ||| ||||||||||    
T  21295834 attatttatctcttttaggtgttaatctttcgattcttatacaacattatcaaataatttgaagttcgaccggaagttaaataaaagatagaaaaaatta 21295735  T
Q  140 tttcatttaaaataaaatttggggtagccaaatata 175  Q
    |||||| |||||| |||||||||||||| |||||||    
T  21295734 tttcatctaaaattaaatttggggtagctaaatata 21295699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 30500937 - 30501004
Alignment:
Q  147 taaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatataccaactc 214  Q
    |||||| ||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  30500937 taaaatcaaacttggggtagccagatatatattattaggggtagcttaatataaaaatataccaactc 30501004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 131 - 209
Target Start/End: Original strand, 22775259 - 22775337
Alignment:
Q  131 aaaaaattatttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatatacc 209  Q
    ||||||||||| ||  ||||||  || |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  22775259 aaaaaattattacacctaaaatcgaacttggggtagccaaatatatattattaggggtagctaaacataaaaatatacc 22775337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 158 - 209
Target Start/End: Original strand, 26769847 - 26769898
Alignment:
Q  158 ttggggtagccaaatatatattattaggggtagctaaatataaaaatatacc 209  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  26769847 ttggggtagccaaatatatattattaggggtagctaaacataaaaatatacc 26769898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 158 - 209
Target Start/End: Complemental strand, 37057579 - 37057528
Alignment:
Q  158 ttggggtagccaaatatatattattaggggtagctaaatataaaaatatacc 209  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  37057579 ttggggtagccaaatatatattattaggggtagctaaacataaaaatatacc 37057528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 131 - 209
Target Start/End: Complemental strand, 37224472 - 37224394
Alignment:
Q  131 aaaaaattatttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatatacc 209  Q
    ||||||||||| ||  ||||||  || ||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  37224472 aaaaaattattacacctaaaatcgaacttgggatagccaaatatatattattaggggtagctaaacataaaaatatacc 37224394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 209
Target Start/End: Original strand, 15871364 - 15871414
Alignment:
Q  159 tggggtagccaaatatatattattaggggtagctaaatataaaaatatacc 209  Q
    |||| |||||||||||| |||| || |||||||||||||||||||||||||    
T  15871364 tgggatagccaaatataaattactaagggtagctaaatataaaaatatacc 15871414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 52724658 - 52724608
Alignment:
Q  159 tggggtagccaaatatatattattaggggtagctaaatataaaaatatacc 209  Q
    |||||||||||||||||||||||||||| |||  |||||||| ||||||||    
T  52724658 tggggtagccaaatatatattattagggatagtcaaatataataatatacc 52724608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 19795511 - 19795456
Alignment:
Q  157 tttggggtagccaaatatatattattaggggtagctaaatataaaaatataccaac 212  Q
    |||||||||||  ||||| ||||||| || ||||||||||||||| ||||||||||    
T  19795511 tttggggtagctcaatatttattatttggagtagctaaatataaatatataccaac 19795456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 136
Target Start/End: Original strand, 35734271 - 35734314
Alignment:
Q  93 aataatttaaagtttgaccggaagttaaataaagatggaaaaaa 136  Q
    |||||||| ||||| ||||||||| |||||||||||||||||||    
T  35734271 aataatttgaagttcgaccggaagctaaataaagatggaaaaaa 35734314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 6e-49; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 41 - 215
Target Start/End: Original strand, 17769220 - 17769394
Alignment:
Q  41 attatttatctcttttgggttctattctttcggatcctgtacgacatgattgaataatttaaagtttgaccggaagttaaataaagatggaaaaaattat 140  Q
    ||||||||||||||||||||  || |||||||  || | ||| |||| ||  |||||||| ||||| ||||||||||||||||||||| |||||||||||    
T  17769220 attatttatctcttttgggtgttaatctttcgattcttatacaacattatcaaataatttgaagttcgaccggaagttaaataaagatagaaaaaattat 17769319  T
Q  141 ttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatataccaactcg 215  Q
    ||||| |||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  17769320 ttcatctaaaattaaacttggggtagctaaatatatattattaggggtagctaaatataaaaatatacctactcg 17769394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 41 - 215
Target Start/End: Original strand, 39685573 - 39685747
Alignment:
Q  41 attatttatctcttttgggttctattctttcggatcctgtacgacatgattgaataatttaaagtttgaccggaagttaaataaagatggaaaaaattat 140  Q
    ||||||||||| |||| |||  || |||||||| |||| |||||||| ||  |||| ||| ||||| || ||||||||||||||| || |||||||||||    
T  39685573 attatttatctttttttggtgttaatctttcggttcctatacgacattatcaaata-tttgaagttcgatcggaagttaaataaaaatagaaaaaattat 39685671  T
Q  141 ttcatttaaaataaaatttggggtagccaaatatatattattag-gggtagctaaatataaaaatataccaactcg 215  Q
    |||| ||||||| ||| |||||||||| |||||||||||||||| || |||||||||||||||||||||| |||||    
T  39685672 ttcacttaaaattaaacttggggtagctaaatatatattattagaggatagctaaatataaaaatatacctactcg 39685747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 93 - 209
Target Start/End: Complemental strand, 13517362 - 13517247
Alignment:
Q  93 aataatttaaagtttgaccggaagttaaataaagatggaaaaaattatttcatttaaaataaaatttggggtagccaaatatatattattaggggtagct 192  Q
    |||||||| || || ||||| |||||||||||||||  ||||||||||||||| |||||| ||| |||||||||  ||||||||||||||| ||||||||    
T  13517362 aataatttgaatttcgaccgaaagttaaataaagataaaaaaaattatttcatctaaaattaaacttggggtagttaaatatatattatta-gggtagct 13517264  T
Q  193 aaatataaaaatatacc 209  Q
    |||||||||||||||||    
T  13517263 aaatataaaaatatacc 13517247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 131 - 209
Target Start/End: Complemental strand, 39570913 - 39570835
Alignment:
Q  131 aaaaaattatttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatatacc 209  Q
    ||||||||||| ||  ||||||  || |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  39570913 aaaaaattattacacctaaaatcgaacttggggtagccaaatatatattattaggggtagctaaacataaaaatatacc 39570835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 158 - 209
Target Start/End: Complemental strand, 6735966 - 6735915
Alignment:
Q  158 ttggggtagccaaatatatattattaggggtagctaaatataaaaatatacc 209  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6735966 ttggggtagccaaatatatattattagaggtagctaaatataaaaatatacc 6735915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 21360958 - 21360908
Alignment:
Q  159 tggggtagccaaatatatattattaggggtagctaaatataaaaatatacc 209  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  21360958 tggggtagccaaatatatattattaggggtagccaaatataataatatacc 21360908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 118 - 214
Target Start/End: Complemental strand, 8403401 - 8403304
Alignment:
Q  118 taaataaagatggaaaaa-attatttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaaaatataccaactc 214  Q
    ||||||| |||||||||| |||||| || ||||||||||||||  |||||| ||||  |||||||||| |||||||||||| ||| ||||||| ||||    
T  8403401 taaataaggatggaaaaagattattccacttaaaataaaatttaaggtagctaaatgcatattattagaggtagctaaataaaaatatatacctactc 8403304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 201
Target Start/End: Complemental strand, 42580514 - 42580444
Alignment:
Q  131 aaaaaattatttcatttaaaataaaatttggggtagccaaatatatattattaggggtagctaaatataaa 201  Q
    ||||||||||||||  |||||| ||| ||||| |||||||||||||||||||| |||||| | ||||||||    
T  42580514 aaaaaattatttcacctaaaatcaaaattgggatagccaaatatatattattaagggtagattaatataaa 42580444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 3498712 - 3498768
Alignment:
Q  156 atttggggtagccaaatatatattattaggggtagctaaatataaaaatataccaac 212  Q
    |||||||||||| |||||| | ||||| |||||||||||||||||||| ||||||||    
T  3498712 atttggggtagctaaatattttttatttggggtagctaaatataaaaacataccaac 3498768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 12947320 - 12947365
Alignment:
Q  158 ttggggtagccaaatatatattattaggggtagctaaatataaaaa 203  Q
    |||||||||| |||||||||||||||| |||||||||| |||||||    
T  12947320 ttggggtagcaaaatatatattattagaggtagctaaacataaaaa 12947365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 191
Target Start/End: Complemental strand, 13734672 - 13734616
Alignment:
Q  135 aattatttcatttaaaataaaatttggggtagccaaatatatattattaggggtagc 191  Q
    ||||||||||| |||||| ||| || || || |||||||||||||||||||||||||    
T  13734672 aattatttcatctaaaatcaaacttaggataaccaaatatatattattaggggtagc 13734616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 12933107 - 12933152
Alignment:
Q  158 ttggggtagccaaatatatattattaggggtagctaaatataaaaa 203  Q
    |||||||| | |||||||||||||||| |||||||||| |||||||    
T  12933107 ttggggtaacaaaatatatattattagaggtagctaaacataaaaa 12933152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 209
Target Start/End: Original strand, 42092340 - 42092373
Alignment:
Q  176 tattattaggggtagctaaatataaaaatatacc 209  Q
    |||||||||||||||||||| |||||||||||||    
T  42092340 tattattaggggtagctaaacataaaaatatacc 42092373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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