View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1328_high_16 (Length: 254)
Name: NF1328_high_16
Description: NF1328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1328_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 33 - 241
Target Start/End: Original strand, 2054377 - 2054585
Alignment:
| Q |
33 |
gatattttgttattatcatttgtagcactgaaatttccgattggatgcgcgttgagtgtattacacatgtttgtgtctgttaaataatatgtaatgggcc |
132 |
Q |
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| T |
2054377 |
gatattttgttattatcatttgtagcactgaaatttcagattggatgcgcgttgagtgtattacacatgtttgtgtctgttaaataatatgtaatgggcc |
2054476 |
T |
|
| Q |
133 |
ttttgttataattcggctaagggtagtttagtttgtttagtattcgaattagagtaatatttgcattatgaactttttgctcattctaataaaactctag |
232 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2054477 |
ttttgttataattcggctaagggtagtttagtttatttattattcgaattagagtaatatttgcattatgaactttttgctcattctaataaaactctag |
2054576 |
T |
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| Q |
233 |
tcgcctttg |
241 |
Q |
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||||||||| |
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| T |
2054577 |
tcgcctttg |
2054585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 44 - 160
Target Start/End: Original strand, 2033141 - 2033258
Alignment:
| Q |
44 |
attatcatttgtagcactgaaatttccgattggatgcgcgttgagtgtattacacatgtttgtgtctg-ttaaataatatgtaatgggccttttgttata |
142 |
Q |
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||||||||||||||||| |||||||| ||||||||||||||||||||| | ||| |||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
2033141 |
attatcatttgtagcaccgaaatttcagattggatgcgcgttgagtgtctaacatgtgtttgtgtctgtttaaataatatgtaatggttcttttgttata |
2033240 |
T |
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| Q |
143 |
attcggctaagggtagtt |
160 |
Q |
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||| | ||||||||||| |
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| T |
2033241 |
attgagataagggtagtt |
2033258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 171
Target Start/End: Complemental strand, 6745878 - 6745823
Alignment:
| Q |
116 |
ataatatgtaatgggccttttgttataattcggctaagggtagtttagtttgttta |
171 |
Q |
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||||||||| ||| | |||||||||||||| |||||||||||||||||||| |||| |
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| T |
6745878 |
ataatatgttatgaggcttttgttataattgggctaagggtagtttagtttattta |
6745823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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