View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1328_high_7 (Length: 331)
Name: NF1328_high_7
Description: NF1328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1328_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 9 - 304
Target Start/End: Complemental strand, 53106872 - 53106577
Alignment:
| Q |
9 |
gagatgaagttaatgatgcaaatagcgatgagaattatcaggaaactgagctttttgaggacaccttagtgatcaacggtccattcaccgaaattgggct |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
|
|
| T |
53106872 |
gagatgaagttaatgatgcaaatagcgatgagaattatcaggaaactgagctttttgaggataccttagtgatcaacggtccattcaccgaaattgggtt |
53106773 |
T |
|
| Q |
109 |
ggaaaatctcgatctgaataatactgagattgtagaggattcagagcctgtagaggatatgataactggtacagtatgtgagtatgagacagaagtggtg |
208 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
53106772 |
ggaaaatctcgatctgaataataccgagattgtagaggattcagagcctgtagaggatatgataactggtacagtatgtgagtatgagacagaagttgtg |
53106673 |
T |
|
| Q |
209 |
tttgatagcgaggacgaagaaatgaataatacaggcaaagtgactgttggtgaaagatttcttgaggatgaaagtagtccaacggtatacaattct |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53106672 |
tttgatagcgaggacgaagaaatgaataatacaggcaaagtgactgttggtaaaagatttcttgaggatgaaagtagtccaacggtatacaattct |
53106577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 9 - 304
Target Start/End: Complemental strand, 43919641 - 43919346
Alignment:
| Q |
9 |
gagatgaagttaatgatgcaaatagcgatgagaattatcaggaaactgagctttttgaggacaccttagtgatcaacggtccattcaccgaaattgggct |
108 |
Q |
| |
|
||||||||||||||||| ||||| | ||||||| ||||| |||||||||||||||||||||||||||||||| | | | ||||||||||| |||| | |
|
|
| T |
43919641 |
gagatgaagttaatgatacaaatggaaatgagaactatcatgaaactgagctttttgaggacaccttagtgattgatgataaattcaccgaaactgggtt |
43919542 |
T |
|
| Q |
109 |
ggaaaatctcgatctgaataatactgagattgtagaggattcagagcctgtagaggatatgataactggtacagtatgtgagtatgagacagaagtggtg |
208 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
43919541 |
ggaaattctcgatctgaataatactgagattgtagaggattcagagcctgtagaggatatgataactggtacagcatgtgagtatgagacagaagtggtg |
43919442 |
T |
|
| Q |
209 |
tttgatagcgaggacgaagaaatgaataatacaggcaaagtgactgttggtgaaagatttcttgaggatgaaagtagtccaacggtatacaattct |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||| | ||||||||||| |||| |||||||| |
|
|
| T |
43919441 |
cttgatagcgaggacgaagaaatgaataatacaggcaaattgacagttggtgaaagatttcttcaggctaaaagtagtccagcggtgaacaattct |
43919346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University